Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, vacuole, cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 1
- plasma membrane 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 2
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc03g119190.2.1 | Tomato | plasma membrane | 93.62 | 40.18 |
| KRH48561 | Soybean | plasma membrane | 61.7 | 26.13 |
| KRH39144 | Soybean | plasma membrane | 61.7 | 26.13 |
| Zm00001d008590_P001 | Maize | plastid | 36.17 | 25.56 |
| VIT_17s0000g03260.t01 | Wine grape | plasma membrane | 56.38 | 25.0 |
| GSMUA_Achr2P07230_001 | Banana | golgi, plasma membrane, vacuole | 53.19 | 23.81 |
| CDY51936 | Canola | endoplasmic reticulum, peroxisome, plasma membrane | 51.06 | 21.43 |
| Bra037594.1-P | Field mustard | plasma membrane | 51.06 | 21.43 |
| CDY67571 | Canola | plasma membrane | 51.06 | 21.43 |
| AT3G18260.1 | Thale cress | plasma membrane | 51.06 | 21.33 |
| CDX75962 | Canola | plasma membrane | 48.94 | 20.54 |
| TraesCS1D01G380400.1 | Wheat | cytosol, peroxisome, plasma membrane | 46.81 | 18.8 |
| TraesCS1B01G393700.1 | Wheat | cytosol, peroxisome, plasma membrane | 46.81 | 18.8 |
| TraesCS1A01G373800.1 | Wheat | cytosol, peroxisome, plasma membrane | 46.81 | 18.8 |
| GSMUA_Achr8P31770_001 | Banana | peroxisome | 43.62 | 18.39 |
| EES19907 | Sorghum | cytosol, peroxisome, plasma membrane | 43.62 | 18.14 |
| Os01t0139000-00 | Rice | plasma membrane | 40.43 | 17.84 |
| TraesCS3B01G294700.1 | Wheat | plasma membrane | 39.36 | 16.89 |
| PGSC0003DMT400016142 | Potato | endoplasmic reticulum, golgi, peroxisome | 43.62 | 16.8 |
| CDY66516 | Canola | endoplasmic reticulum, extracellular | 32.98 | 16.67 |
| EES02516 | Sorghum | peroxisome, plastid | 38.3 | 16.51 |
| Os01t0691400-00 | Rice | cytosol, peroxisome | 40.43 | 16.45 |
| TraesCS3A01G261500.1 | Wheat | plasma membrane | 38.3 | 16.44 |
| Zm00001d038910_P001 | Maize | plasma membrane | 39.36 | 16.3 |
| Zm00001d011631_P001 | Maize | golgi, peroxisome, plasma membrane | 38.3 | 16.29 |
| PGSC0003DMT400074360 | Potato | cytosol, nucleus, plasma membrane | 43.62 | 16.21 |
| HORVU3Hr1G064240.2 | Barley | plasma membrane | 37.23 | 15.98 |
| PGSC0003DMT400051387 | Potato | cytosol, nucleus, plasma membrane | 41.49 | 15.29 |
| KXG33168 | Sorghum | golgi, peroxisome, plasma membrane | 35.11 | 15.28 |
| TraesCS3D01G050800.1 | Wheat | mitochondrion | 37.23 | 14.96 |
| PGSC0003DMT400052428 | Potato | cytosol, plasma membrane, vacuole | 32.98 | 14.83 |
| TraesCS3B01G060400.1 | Wheat | mitochondrion | 37.23 | 14.77 |
| PGSC0003DMT400000230 | Potato | cytosol, nucleus, plasma membrane | 41.49 | 14.72 |
| PGSC0003DMT400032086 | Potato | cytosol, nucleus, plasma membrane | 41.49 | 14.44 |
| GSMUA_AchrUn_... | Banana | golgi | 52.13 | 13.92 |
| PGSC0003DMT400002449 | Potato | cytosol, nucleus, plasma membrane | 36.17 | 13.39 |
| PGSC0003DMT400049928 | Potato | cytosol, nucleus, plasma membrane | 36.17 | 13.33 |
| HORVU1Hr1G083110.3 | Barley | plastid | 40.43 | 13.01 |
| PGSC0003DMT400042905 | Potato | cytosol, peroxisome, plasma membrane | 31.91 | 12.61 |
| PGSC0003DMT400066222 | Potato | plasma membrane | 25.53 | 11.76 |
| PGSC0003DMT400078544 | Potato | endoplasmic reticulum, plasma membrane, vacuole | 19.15 | 11.69 |
| TraesCS3A01G051200.1 | Wheat | cytosol | 38.3 | 10.91 |
| HORVU3Hr1G008400.1 | Barley | cytosol, peroxisome | 38.3 | 10.34 |
| PGSC0003DMT400074138 | Potato | plasma membrane | 31.91 | 10.0 |
| PGSC0003DMT400026113 | Potato | plasma membrane, plastid | 21.28 | 8.2 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400014404 | EnsemblPlantsGene:PGSC0003DMG400005651 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005783 | GO:GO:0005789 | GO:GO:0016020 | GO:GO:0016021 | InterPro:IPR003388 | InterPro:Reticulon |
| PANTHER:PTHR10994 | PANTHER:PTHR10994:SF81 | PFAM:PF02453 | PFscan:PS50845 | PGSC:PGSC0003DMG400005651 | TMHMM:TMhelix |
| UniParc:UPI0002968425 | UniProt:M1A462 | MapMan:13.7.2.1 | : | : | : |
Description
Reticulon family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400005651]
Coordinates
chr3:-:58645296..58645765
Molecular Weight (calculated)
10407.7 Da
IEP (calculated)
6.503
GRAVY (calculated)
0.585
Length
94 amino acids
Sequence
(BLAST)
(BLAST)
1: MATYSSDSDN DLTPTSKLLG RQRPIHSVLG GGKVADILLW RDKRSSGAIL IAVAVMWFLF EVVDYTFVTL LCHVSITTML IVFIWSAGAD IFGW
001: MPIFTGSSSD SEDERTIHKT TKLFTRQRSI HSIFGGGKVA DILLWREPKI AATLVIGVSI LWFLMEVVEY NFITLICHAS MTSMLFFFIW STASDFLNWE
101: RPLIPEVVLD ESSFKQLARS FHVRFNQILT KLLDVACGRD PPLFFLTTIS LYIVSIIGTY FNFVNLLFIG FVSMQTLPVM YEMYEDDVDT AAGKLMRKMK
201: KLYKKVDTNV LSKIPRGTVK NKKFT
101: RPLIPEVVLD ESSFKQLARS FHVRFNQILT KLLDVACGRD PPLFFLTTIS LYIVSIIGTY FNFVNLLFIG FVSMQTLPVM YEMYEDDVDT AAGKLMRKMK
201: KLYKKVDTNV LSKIPRGTVK NKKFT
Arabidopsis Description
RTNLB9Reticulon-like protein B9 [Source:UniProtKB/Swiss-Prot;Acc:Q9LJQ5]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.