Factsheet for PGSC0003DMT400074138

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
plastid 1
cytosol 1
plasma membrane 4
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g006290.1.1	Tomato	nucleus	74.67	96.14
PGSC0003DMT400002449	Potato	cytosol, nucleus, plasma membrane	59.33	70.08
VIT_12s0028g01090.t01	Wine grape	cytosol, peroxisome, plasma membrane	55.33	66.94
KRH14529	Soybean	cytosol, peroxisome, plasma membrane	52.33	64.08
KRH73588	Soybean	plasma membrane	51.67	63.27
KRH45979	Soybean	cytosol, nucleus, plasma membrane	50.0	61.73
CDY00916	Canola	plasma membrane	48.0	60.25
Bra029827.1-P	Field mustard	plasma membrane	47.33	59.41
CDY08616	Canola	plasma membrane	47.33	59.41
KRG99024	Soybean	plasma membrane	50.67	57.58
GSMUA_Achr6P04560_001	Banana	cytosol, peroxisome, plasma membrane	47.33	57.26
AT3G10260.3	Thale cress	plasma membrane	50.67	56.93
GSMUA_Achr9P10200_001	Banana	cytosol, peroxisome, plasma membrane	45.67	56.61
Os03t0781700-01	Rice	cytosol, peroxisome, plasma membrane	44.67	54.25
EER90788	Sorghum	cytosol, nucleus, plasma membrane	44.33	53.85
Zm00001d034313_P001	Maize	cytosol, nucleus, plasma membrane	44.0	53.23
Os07t0142000-01	Rice	plasma membrane	42.67	52.03
TraesCS5D01G426200.1	Wheat	cytosol, peroxisome, plasma membrane	44.67	51.74
TraesCS5B01G420300.1	Wheat	cytosol, nucleus, plasma membrane	44.67	51.74
TraesCS5A01G418200.1	Wheat	cytosol, peroxisome, plasma membrane	45.0	51.72
HORVU5Hr1G101680.2	Barley	cytosol, endoplasmic reticulum, peroxisome	44.67	51.34
TraesCS2D01G254800.1	Wheat	cytosol, peroxisome, vacuole	40.0	48.58
Zm00001d018781_P001	Maize	extracellular, mitochondrion	39.33	48.56
TraesCS2B01G267800.2	Wheat	cytosol, peroxisome, vacuole	39.67	48.18
TraesCS2A01G254300.1	Wheat	cytosol, peroxisome, vacuole	39.67	48.18
CDX82165	Canola	endoplasmic reticulum, peroxisome, plasma membrane, plastid	36.33	43.95
CDY56712	Canola	mitochondrion	51.33	43.38
PGSC0003DMT400049928	Potato	cytosol, nucleus, plasma membrane	35.67	41.96
PGSC0003DMT400074360	Potato	cytosol, nucleus, plasma membrane	35.33	41.9
KXG34376	Sorghum	plasma membrane	43.67	41.72
PGSC0003DMT400051387	Potato	cytosol, nucleus, plasma membrane	35.0	41.18
PGSC0003DMT400032086	Potato	cytosol, nucleus, plasma membrane	36.0	40.0
PGSC0003DMT400000230	Potato	cytosol, nucleus, plasma membrane	35.33	40.0
PGSC0003DMT400016142	Potato	endoplasmic reticulum, golgi, peroxisome	28.67	35.25
PGSC0003DMT400066222	Potato	plasma membrane	23.33	34.31
PGSC0003DMT400052428	Potato	cytosol, plasma membrane, vacuole	23.67	33.97
HORVU2Hr1G060770.16	Barley	plasma membrane	41.33	32.38
PGSC0003DMT400042905	Potato	cytosol, peroxisome, plasma membrane	25.67	32.35
PGSC0003DMT400014404	Potato	cytosol, plasma membrane, vacuole	10.0	31.91
PGSC0003DMT400078544	Potato	endoplasmic reticulum, plasma membrane, vacuole	15.0	29.22
PGSC0003DMT400026113	Potato	plasma membrane, plastid	16.67	20.49

Protein Annotations

EnsemblPlants:PGSC0003DMT400074138	EnsemblPlantsGene:PGSC0003DMG400028815	EntrezGene:102601510	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005783	GO:GO:0005789	GO:GO:0016020	GO:GO:0016021	InterPro:IPR003388
InterPro:Reticulon	PANTHER:PTHR10994	PANTHER:PTHR10994:SF62	PFAM:PF02453	PFscan:PS50845	PGSC:PGSC0003DMG400028815
SEG:seg	TMHMM:TMhelix	UniParc:UPI0002958BC0	UniProt:M1CT78	MapMan:13.7.2.1	:

Description

Reticulon family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400028815]

Coordinates

chr12:+:6029953..6033907

Molecular Weight (calculated)

33482.8 Da

IEP (calculated)

8.823

GRAVY (calculated)

0.164

Length

300 amino acids

Sequence
(BLAST)

001: MGVTTFLESP SNMIYQYLDY INLAAFHNGF VSCVILLMTD LASYVSKEKR KNKMPEGITA ENLLNNIMDS ISEGELKHKA ASFFQEESES SVSAQFNRLF
101: GRQKPIHRCL GGGKSADSML WRNKKISAGV LISATAIWVL FEWLNYNFLS LVCFALSFGL IAQFLLKNAS GVINRSPTVP RLVLPEDLFI NIAKRIGTEI
201: NHGLGFLQDA ALGSNLKQFI VVILSLWAAG MIGSWCNFLT VLYIGFIAAH TLPVLYERYE DEVDGFVYSA LDKLQGHYKK LDSGVLSRLP RGSFRGKKVE

Best Arabidopsis Sequence Match ( AT3G10260.1 )
(BLAST)

001: MPDKNIVEDV IGDLVDNFTE TVQKNKHGSS FFEQEDSVSS RFNRLFDRQK PIHHVLGGGK SADVLLWRNK KISASVLMGA TAIWVLFEWI NFHFLSLVCY
101: ALLLGMIAQF VWSNASGFLN RSQSRVPRLV LPKDFFAEVG VAVGKEVNRG LLFLQDLACK GNLKQFLMAV IGLWVAAMVG SCCNFLTVLY IGFVGAHTMP
201: VLYERYEDEV DGFMDSMIMK FHSHYKKLDT GFLSRIPSGK FGLKKRE

Arabidopsis Description

Reticulon family protein [Source:TAIR;Acc:AT3G10260]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.