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Potato
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Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol, nucleus, plasma membrane

Predictor Summary:
  • nucleus 2
  • cytosol 1
  • plastid 1
  • extracellular 1
  • golgi 1
  • plasma membrane 2
  • endoplasmic reticulum 1
  • vacuole 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, nucleus, plasma membrane
Any Predictor:cytosol, nucleus, plastid, secretory
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:plastid
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
PGSC0003DMT400006409
PGSC0003DMT400008917
PGSC0003DMT400013956
PGSC0003DMT400015485
PGSC0003DMT400024446
PGSC0003DMT400026189
PGSC0003DMT400026984
PGSC0003DMT400032086
PGSC0003DMT400040138
PGSC0003DMT400047688
PGSC0003DMT400048302
PGSC0003DMT400048758
PGSC0003DMT400051424
PGSC0003DMT400051743
PGSC0003DMT400052223
PGSC0003DMT400056935
PGSC0003DMT400056939
PGSC0003DMT400058489
PGSC0003DMT400064539
PGSC0003DMT400069186

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G11220.1 PGSC0003DMT400069186 AT1G09330.1 21798944
AT4G11220.1 PGSC0003DMT400048758 AT3G59500.1 21798944
AT4G11220.1 PGSC0003DMT400051743 AT3G59500.1 21798944
AT5G41600.1 PGSC0003DMT400006409 AT1G55190.1 21798944
AT5G41600.1 PGSC0003DMT400015485 AT1G77350.1 21798944
AT5G41600.1 PGSC0003DMT400024446 AT2G03120.1 21798944
AT5G41600.1 PGSC0003DMT400058489 AT2G03120.1 21798944
AT5G41600.1 PGSC0003DMT400064539 AT2G39960.1 21798944
AT5G41600.1 PGSC0003DMT400026984 AT2G46890.1 21798944
AT5G41600.1 PGSC0003DMT400051424 AT2G46890.1 21798944
AT5G41600.1 PGSC0003DMT400026189 AT3G02420.1 21798944
AT5G41600.1 PGSC0003DMT400048302 AT3G02420.1 21798944
AT5G41600.1 PGSC0003DMT400052223 AT3G27080.1 21798944
AT5G41600.1 PGSC0003DMT400056935 AT3G27080.1 21798944
AT5G41600.1 PGSC0003DMT400056939 AT3G27080.1 21798944
AT5G41600.1 PGSC0003DMT400008917 AT3G46060.1 21798944
AT5G41600.1 PGSC0003DMT400040138 AT3G46060.1 21798944
AT5G41600.1 PGSC0003DMT400048758 AT3G59500.1 21798944
AT5G41600.1 PGSC0003DMT400051743 AT3G59500.1 21798944
AT5G41600.1 PGSC0003DMT400032086 AT5G41600.1 21798944
AT5G41600.1 PGSC0003DMT400013956 AT5G53560.1 21798944
AT5G41600.1 PGSC0003DMT400047688 AT5G53560.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc08g081730.2.1 Tomato endoplasmic reticulum, plastid 97.04 97.04
KRH59988 Soybean mitochondrion 70.37 74.8
KRH41254 Soybean cytosol, nucleus, plasma membrane 69.26 73.62
PGSC0003DMT400000230 Potato cytosol, nucleus, plasma membrane 69.63 70.94
VIT_02s0025g00640.t01 Wine grape cytosol, nucleus, plasma membrane 65.93 70.63
Os01t0226300-01 Rice plasma membrane 45.56 69.1
PGSC0003DMT400049928 Potato cytosol, nucleus, plasma membrane 64.81 68.63
VIT_15s0046g01760.t01 Wine grape cytosol, peroxisome, plasma membrane 64.44 68.24
GSMUA_Achr8P27830_001 Banana cytosol, peroxisome, plasma membrane 63.33 68.13
Zm00001d012776_P001 Maize extracellular 63.7 67.98
Zm00001d043551_P003 Maize plasma membrane 64.44 67.7
KXG33320 Sorghum cytosol, nucleus, plasma membrane 64.44 67.44
Os05t0526400-01 Rice plasma membrane 62.59 67.33
Os01t0736900-01 Rice plasma membrane 62.96 67.19
GSMUA_AchrUn_... Banana cytosol, nucleus, plasma membrane 63.7 66.67
PGSC0003DMT400051387 Potato cytosol, nucleus, plasma membrane 62.96 66.67
HORVU3Hr1G069970.2 Barley cytosol, nucleus, plasma membrane 62.59 66.27
CDX90792 Canola cytosol, peroxisome, plasma membrane 65.19 65.92
Bra000739.1-P Field mustard cytosol 65.19 65.92
CDY25557 Canola cytosol, endoplasmic reticulum, nucleus 61.11 65.74
GSMUA_Achr9P05440_001 Banana nucleus, peroxisome, plasma membrane 61.11 65.74
TraesCS3A01G278800.1 Wheat golgi 60.37 65.73
TraesCS1D01G349700.1 Wheat cytosol, nucleus, plasma membrane 60.37 65.73
TraesCS3D01G279100.1 Wheat cytosol, nucleus, plasma membrane 60.37 65.73
GSMUA_Achr6P31860_001 Banana cytosol, nucleus, plasma membrane 61.11 65.48
TraesCS1B01G360800.1 Wheat cytosol, nucleus, plasma membrane 60.37 65.46
AT5G41600.1 Thale cress cytosol, nucleus, plasma membrane 62.22 65.37
TraesCS3B01G313000.1 Wheat cytosol, nucleus, plasma membrane 61.11 65.22
CDY08353 Canola cytosol, endoplasmic reticulum, nucleus 60.37 65.2
EES19841 Sorghum cytosol, nucleus, plasma membrane 61.48 65.1
CDY34396 Canola cytosol, endoplasmic reticulum, nucleus 60.37 64.94
PGSC0003DMT400074360 Potato cytosol, nucleus, plasma membrane 60.74 64.82
CDY10954 Canola cytosol 64.44 64.44
CDY38194 Canola cytosol, nucleus, plasma membrane 59.63 64.4
AT4G23630.2 Thale cress nucleus 65.56 64.36
Bra019285.1-P Field mustard cytosol 63.7 64.18
Bra027678.1-P Field mustard cytosol, endoplasmic reticulum, nucleus 59.63 64.14
CDY44123 Canola cytosol, nucleus, plasma membrane 65.56 64.13
AT4G11220.1 Thale cress nucleus 64.07 63.84
Bra027757.1-P Field mustard cytosol, endoplasmic reticulum, peroxisome 58.89 63.6
Bra010539.1-P Field mustard cytosol 63.33 63.57
CDY24806 Canola cytosol 64.44 63.5
GSMUA_Achr10P... Banana cytosol, endoplasmic reticulum, plasma membrane 59.26 63.49
Bra013717.1-P Field mustard nucleus 64.81 63.41
Zm00001d038768_P001 Maize extracellular, mitochondrion 59.63 63.39
CDY57657 Canola cytosol, nucleus, plasma membrane 64.44 63.27
CDY41666 Canola cytosol 64.07 62.68
GSMUA_Achr4P08400_001 Banana cytosol 57.78 61.66
GSMUA_Achr3P31920_001 Banana cytosol 49.63 61.19
GSMUA_Achr5P06850_001 Banana cytosol, nucleus, plasma membrane 55.93 60.4
AT1G64090.2 Thale cress cytosol, endoplasmic reticulum, nucleus 60.37 60.15
Zm00001d008982_P001 Maize cytosol, nucleus, plasma membrane 60.74 58.78
TraesCS3D01G159100.1 Wheat cytosol, nucleus, plasma membrane 62.22 58.74
TraesCS3B01G178100.1 Wheat cytosol, nucleus, plasma membrane 61.85 58.39
CDY13240 Canola cytosol, peroxisome, plasma membrane 34.81 58.39
KXG31516 Sorghum cytosol, nucleus, plasma membrane 61.11 58.1
Zm00001d016041_P001 Maize extracellular 48.15 56.52
Os02t0265900-01 Rice cytosol, peroxisome, plasma membrane 47.78 56.09
OQU84758 Sorghum cytosol, peroxisome, plasma membrane 47.04 54.74
Zm00001d039316_P001 Maize cytosol, nucleus, plasma membrane 61.85 54.58
CDY05135 Canola mitochondrion 62.59 53.99
HORVU3Hr1G030760.2 Barley mitochondrion 61.85 53.18
Zm00001d020729_P001 Maize plasma membrane 18.52 52.63
Zm00001d020229_P001 Maize plasma membrane 29.63 52.63
EER89811 Sorghum peroxisome 49.63 52.34
TraesCS3A01G151200.1 Wheat cytosol, peroxisome, plasma membrane 62.22 52.17
TraesCS7D01G337800.1 Wheat cytosol, peroxisome, plasma membrane, plastid 49.63 51.54
TraesCS7B01G241100.1 Wheat cytosol, peroxisome, plasma membrane, plastid 49.63 51.54
TraesCS7A01G341800.1 Wheat cytosol, peroxisome, plasma membrane, plastid 49.63 51.54
Os06t0503400-01 Rice plasma membrane 50.0 50.94
TraesCS1A01G346800.3 Wheat plasma membrane 47.41 50.79
Zm00001d037453_P001 Maize cytosol, peroxisome, plasma membrane 48.52 50.19
HORVU1Hr1G082010.3 Barley cytosol, nucleus, plasma membrane, plastid 47.04 48.66
PGSC0003DMT400016142 Potato endoplasmic reticulum, golgi, peroxisome 43.33 47.95
CDY62522 Canola cytosol 14.07 47.5
HORVU7Hr1G081290.4 Barley plastid 40.37 47.19
HORVU7Hr1G075700.2 Barley mitochondrion 49.26 44.33
PGSC0003DMT400052428 Potato cytosol, plasma membrane, vacuole 32.22 41.63
PGSC0003DMT400014404 Potato cytosol, plasma membrane, vacuole 14.44 41.49
GSMUA_Achr3P15760_001 Banana cytosol 22.59 40.67
PGSC0003DMT400002449 Potato cytosol, nucleus, plasma membrane 38.15 40.55
Bra035242.1-P Field mustard cytosol 30.0 40.5
CDX86802 Canola cytosol, nucleus, peroxisome 36.3 40.0
PGSC0003DMT400078544 Potato endoplasmic reticulum, plasma membrane, vacuole 21.85 38.31
PGSC0003DMT400074138 Potato plasma membrane 40.0 36.0
PGSC0003DMT400042905 Potato cytosol, peroxisome, plasma membrane 30.74 34.87
VIT_07s0031g02730.t01 Wine grape golgi, mitochondrion, nucleus, plasma membrane 22.96 34.44
PGSC0003DMT400066222 Potato plasma membrane 25.93 34.31
PGSC0003DMT400026113 Potato plasma membrane, plastid 23.7 26.23
Protein Annotations
EntrezGene:102606390MapMan:13.7.2.1GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737
GO:GO:0005783GO:GO:0005789GO:GO:0016020GO:GO:0016021InterPro:IPR003388UniProt:M1AWU2
PFAM:PF02453EnsemblPlantsGene:PGSC0003DMG402012314PGSC:PGSC0003DMG402012314EnsemblPlants:PGSC0003DMT400032086PFscan:PS50845PANTHER:PTHR10994
PANTHER:PTHR10994:SF125InterPro:ReticulonTMHMM:TMhelixUniParc:UPI0002966732RefSeq:XP_006343915.1SEG:seg
Description
VIRB2-interacting protein 2 [Source:PGSC_GENE;Acc:PGSC0003DMG402012314]
Coordinates
chr8:+:55411710..55414235
Molecular Weight (calculated)
30059.4 Da
IEP (calculated)
8.138
GRAVY (calculated)
-0.099
Length
270 amino acids
Sequence
(BLAST)
001: MTEHEEHKVE KEEQDESLMD KISEKLHFSN HSSSPAPASS SSDSDDEKKK PTSPAPETSS FGSKVRRLFG RERPVHKVFG GGKPADVFLW RNKKISAGFL
101: GGATAIWVLF EVVEYHLLTL LCHGLMVALA GLFLWSNAST FIHKSAPHIP EVHIPEKPVL AFASALRNEI NRALAVLREI ASGRDLKTFL LVIGGLWLAS
201: ILGGCCDFLT LFYIIVVVLH TVPVLYEKYE DQVDAFAEKA LHELKKQYAV FDAKVLSKIP RGPLKDKKKD
Best Arabidopsis Sequence Match ( AT4G23630.2 )
(BLAST)
001: MAEEHKHDES VIAPEPAVEV VERESLMDKI SEKIHHGGDS SSSSSSSDDE DEKKKTKKPS SPSSSMKSKV YRLFGREQPV HKVLGGGKPA DIFMWKNKKM
101: SGGVLGGATA AWVVFELMEY HLLTLLCHVM IVVLAVLFLW SNATMFINKS PPKIPEVHIP EEPILQLASG LRIEINRGFS SLREIASGRD LKKFLIAIAG
201: LWVLSILGGC FNFLTLAYIA LVLLFTVPLA YDKYEDKVDP LGEKAMIELK KQYAVLDEKV LSKIPLGPLK NKKKD
Arabidopsis Description
RTNLB1Reticulon-like protein [Source:UniProtKB/TrEMBL;Acc:A0A178V247]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.