Factsheet for PGSC0003DMT400051424

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 2
extracellular 5
golgi 4
plasma membrane 6
endoplasmic reticulum 4
vacuole 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	plastid, secretory
BaCelLo:	plastid
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400071510
PGSC0003DMT400073246

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G46890.1	PGSC0003DMT400071510	AT4G19030.1	21798944
AT2G46890.1	PGSC0003DMT400073246	AT4G19030.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g005320.2.1	Tomato	plasma membrane	94.72	94.72
PGSC0003DMT400026984	Potato	plasma membrane	65.53	66.35
HORVU2Hr1G093180.1	Barley	golgi, mitochondrion, plasma membrane	39.75	61.54
VIT_15s0048g02220.t01	Wine grape	plasma membrane	61.18	61.37
AT2G46890.1	Thale cress	plasma membrane	59.01	59.01
TraesCS2D01G037000.1	Wheat	plasma membrane	57.45	57.28
TraesCS2B01G051300.1	Wheat	plasma membrane	56.83	57.19
Bra004499.1-P	Field mustard	plasma membrane	57.45	57.1
CDX80055	Canola	plasma membrane	57.14	56.79
KRG97275	Soybean	mitochondrion	55.9	56.78
TraesCS2A01G038000.1	Wheat	plasma membrane	57.14	56.44
KRH06317	Soybean	plasma membrane	56.83	56.31
EES10337	Sorghum	plasma membrane	55.9	56.25
KRH47737	Soybean	plasma membrane	56.52	56.0
HORVU2Hr1G005680.1	Barley	endoplasmic reticulum, plasma membrane	56.52	52.3
Zm00001d024925_P001	Maize	plasma membrane	55.9	51.28
GSMUA_Achr1P00860_001	Banana	cytosol, endoplasmic reticulum, peroxisome	55.9	50.28
Os04t0105300-01	Rice	cytosol, nucleus, plastid	40.37	45.3
PGSC0003DMT400074062	Potato	plasma membrane	16.15	18.12
PGSC0003DMT400014451	Potato	plasma membrane	16.77	16.88
PGSC0003DMT400014452	Potato	cytosol, golgi, plasma membrane	13.04	16.6

Protein Annotations

Gene3D:1.20.120.1630	EntrezGene:102592879	InterPro:3-oxo-5_a-steroid_4-DH_C	MapMan:35.2	InterPro:DUF1295	GO:GO:0003674
GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006629
GO:GO:0008150	GO:GO:0008152	GO:GO:0016020	GO:GO:0016021	GO:GO:0016627	GO:GO:0055114
InterPro:IPR001104	UniProt:M1BRQ5	PFAM:PF06966	EnsemblPlantsGene:PGSC0003DMG400019973	PGSC:PGSC0003DMG400019973	EnsemblPlants:PGSC0003DMT400051424
PFscan:PS50244	PANTHER:PTHR32251	PANTHER:PTHR32251:SF14	TMHMM:TMhelix	UniParc:UPI00029483EE	RefSeq:XP_006364040.1

Description

Oxidoreductase [Source:PGSC_GENE;Acc:PGSC0003DMG400019973]

Coordinates

chr1:-:543126..545652

Molecular Weight (calculated)

38598.4 Da

IEP (calculated)

8.938

GRAVY (calculated)

0.199

Length

322 amino acids

Sequence
(BLAST)

001: MATLSNFKNG LIAFLATFPC ILFYLCFLHN IHNEDHNSLW SWCNNHPILL ANIMFFLNIN VLFWFIALLQ SNLHWMIGLY WMVIPVMLLH FYANLPMAQY
101: NQLRSWIVTI LTWIWSIRMI HSYFRRENWQ LGVKQDWRYT DMSNQYGKNW WWISFFAIYL SQQVLQMGIC LPLYIVHSVD KPLIFLDFIA ISICLSGVTI
201: AFYADTELHN FITKNQKLQQ LGQPMVPILD KGLWCYSRHP NYLGEQLWWW GLALFGWNLG QNWIFIGALI NSMCLGYVTM LVEKKMVRQN YRADAYKLYQ
301: RNTFVWIPWF NFSSNEKDKK KD

Best Arabidopsis Sequence Match ( AT2G46890.1 )
(BLAST)

001: MNRNLRNAIV AFLAPLPSIV FYLTFLSNYS SSSDSELSSI QSWCLNHPLL LANLLFFLNV NVLFWVIGLL QSSHWMIDVY WTVIPVMLVH YFASHPLSQY
101: NKLRSMIVIT LTWIWSIRLT HNYFRRENWE WGAREDWRFN DLRKQYGKHW WWLSFFSVYV SQQIFLIGIC LPLYVIHSID EPLNIWDFIS SAICLTGIVM
201: AYFADTQLHE FVTGNQKLKE QGKPKIPNLD SGLWRYSRHP NYLGEQLWWW GLVIFAWNLG QGWTLIGALV NTLCLVYVTI LVERRMVKQQ YRAEAYRAYQ
301: KTTSVWIPWF KSHAAATKDK NT

Arabidopsis Description

3-oxo-5-alpha-steroid 4-dehydrogenase (DUF1295) [Source:UniProtKB/TrEMBL;Acc:O81042]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.