Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 1
- extracellular 4
- golgi 4
- plasma membrane 7
- endoplasmic reticulum 4
- vacuole 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G46890.1 | CDX78905 | AT4G19030.1 | 21798944 |
| AT2G46890.1 | CDX98596 | AT4G19030.1 | 21798944 |
| AT2G46890.1 | CDX99411 | AT4G19030.1 | 21798944 |
| AT2G46890.1 | CDY01565 | AT4G19030.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra004499.1-P | Field mustard | plasma membrane | 99.38 | 99.38 |
| AT2G46890.1 | Thale cress | plasma membrane | 88.27 | 88.82 |
| HORVU2Hr1G093180.1 | Barley | golgi, mitochondrion, plasma membrane | 44.14 | 68.75 |
| KRH06317 | Soybean | plasma membrane | 68.21 | 68.0 |
| Solyc02g063390.2.1 | Tomato | plasma membrane | 66.67 | 67.92 |
| VIT_15s0048g02220.t01 | Wine grape | plasma membrane | 66.67 | 67.29 |
| KRH47737 | Soybean | plasma membrane | 67.28 | 67.08 |
| PGSC0003DMT400026984 | Potato | plasma membrane | 65.43 | 66.67 |
| KRG97275 | Soybean | mitochondrion | 62.96 | 64.35 |
| TraesCS2D01G037000.1 | Wheat | plasma membrane | 63.89 | 64.09 |
| TraesCS2B01G051300.1 | Wheat | plasma membrane | 63.27 | 64.06 |
| EES10337 | Sorghum | plasma membrane | 62.96 | 63.75 |
| TraesCS2A01G038000.1 | Wheat | plasma membrane | 63.89 | 63.5 |
| GSMUA_Achr1P00860_001 | Banana | cytosol, endoplasmic reticulum, peroxisome | 65.12 | 58.94 |
| HORVU2Hr1G005680.1 | Barley | endoplasmic reticulum, plasma membrane | 63.27 | 58.91 |
| PGSC0003DMT400051424 | Potato | plasma membrane | 56.79 | 57.14 |
| Solyc01g005320.2.1 | Tomato | plasma membrane | 56.48 | 56.83 |
| Zm00001d024925_P001 | Maize | plasma membrane | 61.42 | 56.7 |
| Os04t0105300-01 | Rice | cytosol, nucleus, plastid | 47.84 | 54.01 |
| CDX96490 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 18.52 | 24.69 |
| CDX82058 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 22.22 | 24.57 |
| CDY47744 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 21.3 | 23.63 |
| CDX72998 | Canola | plasma membrane | 20.99 | 23.37 |
| CDY26182 | Canola | plasma membrane | 20.68 | 22.95 |
| CDY19194 | Canola | plasma membrane | 20.37 | 22.6 |
Protein Annotations
| Gene3D:1.20.120.1630 | InterPro:3-oxo-5_a-steroid_4-DH_C | MapMan:35.2 | GO:A0A078CTC3 | EnsemblPlants:CDX80055 | ProteinID:CDX80055 |
| ProteinID:CDX80055.1 | InterPro:DUF1295 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006629 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0016020 |
| GO:GO:0016021 | GO:GO:0016627 | EnsemblPlantsGene:GSBRNA2T00132942001 | InterPro:IPR001104 | PFAM:PF06966 | PFscan:PS50244 |
| PANTHER:PTHR32251 | PANTHER:PTHR32251:SF14 | TMHMM:TMhelix | UniParc:UPI0004EF0C33 | SEG:seg | : |
Description
BnaA05g01010D
Coordinates
chrLK031819:-:1587008..1588159
Molecular Weight (calculated)
38419.5 Da
IEP (calculated)
9.304
GRAVY (calculated)
0.103
Length
324 amino acids
Sequence
(BLAST)
(BLAST)
001: MNRNLRNAII AFLAPLPSIV FYLSFLRSYS PTSDPELSHI HSWCSNHPLL LANLLFFLNV NFLFWVIGLL QSSHWMIDVY WTVIPVMLVH YFASHPLGEY
101: NKWRSMVVVI LTWVWSVRLT HNYFRRENWE WGAREDWRFN DLRKQYGKHW WWLSFFSVYV SQQIFLIGIC LPLYTIHSVD APLNIWDFVS SAICLTGIVM
201: AYFADTQLHE FVTQNQKLKE QGKPKIPNLD TGLWYYSRHP NYLGEQLWWW GLVVFAWNLG QGWTLIGALV NTLCLVYVTI LVERRMVKQE YRAEAYRAYQ
301: KTTSVWIPWF KSQVAAAVSK DKST
101: NKWRSMVVVI LTWVWSVRLT HNYFRRENWE WGAREDWRFN DLRKQYGKHW WWLSFFSVYV SQQIFLIGIC LPLYTIHSVD APLNIWDFVS SAICLTGIVM
201: AYFADTQLHE FVTQNQKLKE QGKPKIPNLD TGLWYYSRHP NYLGEQLWWW GLVVFAWNLG QGWTLIGALV NTLCLVYVTI LVERRMVKQE YRAEAYRAYQ
301: KTTSVWIPWF KSQVAAAVSK DKST
001: MNRNLRNAIV AFLAPLPSIV FYLTFLSNYS SSSDSELSSI QSWCLNHPLL LANLLFFLNV NVLFWVIGLL QSSHWMIDVY WTVIPVMLVH YFASHPLSQY
101: NKLRSMIVIT LTWIWSIRLT HNYFRRENWE WGAREDWRFN DLRKQYGKHW WWLSFFSVYV SQQIFLIGIC LPLYVIHSID EPLNIWDFIS SAICLTGIVM
201: AYFADTQLHE FVTGNQKLKE QGKPKIPNLD SGLWRYSRHP NYLGEQLWWW GLVIFAWNLG QGWTLIGALV NTLCLVYVTI LVERRMVKQQ YRAEAYRAYQ
301: KTTSVWIPWF KSHAAATKDK NT
101: NKLRSMIVIT LTWIWSIRLT HNYFRRENWE WGAREDWRFN DLRKQYGKHW WWLSFFSVYV SQQIFLIGIC LPLYVIHSID EPLNIWDFIS SAICLTGIVM
201: AYFADTQLHE FVTGNQKLKE QGKPKIPNLD SGLWRYSRHP NYLGEQLWWW GLVIFAWNLG QGWTLIGALV NTLCLVYVTI LVERRMVKQQ YRAEAYRAYQ
301: KTTSVWIPWF KSHAAATKDK NT
Arabidopsis Description
3-oxo-5-alpha-steroid 4-dehydrogenase (DUF1295) [Source:UniProtKB/TrEMBL;Acc:O81042]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.