CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
extracellular 3
endoplasmic reticulum 4
vacuole 3
plasma membrane 5
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY26182	Canola	plasma membrane	98.97	98.97
AT1G18180.1	Thale cress	plasma membrane	89.04	85.25
CDX72998	Canola	plasma membrane	80.48	80.76
CDY47744	Canola	endoplasmic reticulum, plasma membrane, vacuole	79.45	79.45
CDX82058	Canola	endoplasmic reticulum, plasma membrane, vacuole	78.77	78.5
CDX96490	Canola	endoplasmic reticulum, plasma membrane, vacuole	65.07	78.19
PGSC0003DMT400074062	Potato	plasma membrane	71.92	73.17
VIT_17s0000g02520.t01	Wine grape	plasma membrane	76.37	72.64
Solyc06g068970.2.1	Tomato	nucleus	71.23	72.47
KRH41812	Soybean	endoplasmic reticulum, plasma membrane, vacuole	69.18	69.42
TraesCS4B01G043600.1	Wheat	extracellular, plasma membrane, vacuole	68.84	69.07
Os03t0708400-01	Rice	plasma membrane	68.84	69.07
KXG37747	Sorghum	endoplasmic reticulum, plasma membrane, vacuole	69.18	68.94
TraesCS4D01G041100.1	Wheat	extracellular, plasma membrane, vacuole	68.15	68.38
TraesCS4A01G270500.1	Wheat	extracellular, plasma membrane, vacuole	67.81	68.04
Solyc03g118830.2.1	Tomato	plasma membrane	70.21	67.43
HORVU4Hr1G007090.1	Barley	extracellular, plasma membrane, vacuole	67.12	67.35
Zm00001d013456_P001	Maize	endoplasmic reticulum, plasma membrane, vacuole	66.78	67.01
KRH60513	Soybean	plasma membrane	68.84	65.69
GSMUA_Achr7P11890_001	Banana	plasma membrane	71.23	64.6
PGSC0003DMT400014451	Potato	plasma membrane	70.55	64.38
PGSC0003DMT400014452	Potato	cytosol, golgi, plasma membrane	44.86	51.78
CDX80055	Canola	plasma membrane	22.6	20.37

Protein Annotations

Gene3D:1.20.120.1630	InterPro:3-oxo-5_a-steroid_4-DH_C	MapMan:35.2	GO:A0A078G149	UniProt:A0A078G149	EnsemblPlants:CDY19194
ProteinID:CDY19194	ProteinID:CDY19194.1	InterPro:DUF1295	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006629	GO:GO:0008150	GO:GO:0008152
GO:GO:0016020	GO:GO:0016021	GO:GO:0016627	GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00006490001	InterPro:IPR001104
PFAM:PF06966	PFscan:PS50244	PANTHER:PTHR32251	PANTHER:PTHR32251:SF15	TMHMM:TMhelix	UniParc:UPI0004EF02B1

Description

BnaC05g13950DBnaC05g13950D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G149]

Coordinates

chrLK032093:+:148846..151034

Molecular Weight (calculated)

33734.8 Da

IEP (calculated)

9.650

GRAVY (calculated)

0.430

Length

292 amino acids

Sequence
(BLAST)

001: MVKVIDSHYL TITAIVTVVY QFIFFVITAL FKFDQVTDFA GSTNFVILAV LTLVLKGTWH FRQVVLTSLV VVWGLRLGMF LLMRILKWGE DRRFDEMREN
101: MGKLVVFWTL QAVWVWTVSL PVTLVNASNG GRLFQPADVI GWTMFVAGFL VEAIADQQKL LFKNRQENKG RWCDVGLWKY SRHPNYFGEM LLWWGIYVAS
201: LPVLEGAEYL VIVGPIFLTL LLFFVSGIPL LEESADKKYG NLGAYRHYKK TTSPLILLPR GVYGYLPKWC KTVFLFEFPL YSKNLPQETT VW

Best Arabidopsis Sequence Match ( AT1G18180.1 )
(BLAST)

001: MVKVIDSHYL AITAIVTVGY QFIFFVITAL FKFDQVTDFA GSTNFVILAV LTLLLKGTWH YRQIVLTVLV VVWGLRLGLF LLMRILQWGE DRRFDDMREN
101: IGKLVVFWIF QAVWVWTVSL PVTFVNASNG GRLFQPADVI GWTMWVAGFL IEATADQQKL SFKKCPENKG KWCDVGVWKY SRHPNYFGEM LLWWGLYVAS
201: LPVLKGLEYL VIIGPVFLTL LLLFVSGIPL LEESADKKYG NLGAYRHYKK TTSPLILLPR GVYGYLPIWC KSVFLFEFPL YSRNLPQETT AWDRRNSKKS
301: QRSID

Arabidopsis Description

Protein of unknown function (DUF1295) [Source:TAIR;Acc:AT1G18180]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.