Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 1
- extracellular 4
- endoplasmic reticulum 5
- vacuole 4
- plasma membrane 7
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc03g118830.2.1 | Tomato | plasma membrane | 86.25 | 90.79 |
| PGSC0003DMT400074062 | Potato | plasma membrane | 74.69 | 83.28 |
| Os03t0708400-01 | Rice | plasma membrane | 67.81 | 74.57 |
| VIT_17s0000g02520.t01 | Wine grape | plasma membrane | 70.31 | 73.29 |
| Zm00001d013456_P001 | Maize | endoplasmic reticulum, plasma membrane, vacuole | 66.56 | 73.2 |
| KXG37747 | Sorghum | endoplasmic reticulum, plasma membrane, vacuole | 66.88 | 73.04 |
| KRH41812 | Soybean | endoplasmic reticulum, plasma membrane, vacuole | 65.62 | 72.16 |
| Bra015977.1-P | Field mustard | plasma membrane | 64.69 | 71.13 |
| CDX96490 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 53.75 | 70.78 |
| Bra008106.1-P | Field mustard | endoplasmic reticulum, plasma membrane, vacuole | 64.69 | 70.65 |
| CDY19194 | Canola | plasma membrane | 64.38 | 70.55 |
| Bra025926.1-P | Field mustard | plasma membrane | 64.38 | 70.55 |
| AT1G73650.3 | Thale cress | plasma membrane | 66.56 | 70.53 |
| CDX72998 | Canola | plasma membrane | 64.06 | 70.45 |
| HORVU4Hr1G007090.1 | Barley | extracellular, plasma membrane, vacuole | 64.06 | 70.45 |
| CDY47744 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 64.06 | 70.21 |
| CDY26182 | Canola | plasma membrane | 64.06 | 70.21 |
| CDX82058 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 64.06 | 69.97 |
| TraesCS4B01G043600.1 | Wheat | extracellular, plasma membrane, vacuole | 63.44 | 69.76 |
| KRH60513 | Soybean | plasma membrane | 66.56 | 69.61 |
| PGSC0003DMT400014452 | Potato | cytosol, golgi, plasma membrane | 55.0 | 69.57 |
| TraesCS4A01G270500.1 | Wheat | extracellular, plasma membrane, vacuole | 63.12 | 69.42 |
| TraesCS4D01G041100.1 | Wheat | extracellular, plasma membrane, vacuole | 63.12 | 69.42 |
| AT1G18180.1 | Thale cress | plasma membrane | 64.69 | 67.87 |
| GSMUA_Achr7P11890_001 | Banana | plasma membrane | 67.19 | 66.77 |
| PGSC0003DMT400026984 | Potato | plasma membrane | 21.25 | 21.38 |
| PGSC0003DMT400051424 | Potato | plasma membrane | 16.88 | 16.77 |
Protein Annotations
| Gene3D:1.20.120.1630 | EntrezGene:102600876 | InterPro:3-oxo-5_a-steroid_4-DH_C | MapMan:35.2 | InterPro:DUF1295 | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006629 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016627 | GO:GO:0055114 |
| InterPro:IPR001104 | UniProt:M1A490 | PFAM:PF06966 | EnsemblPlantsGene:PGSC0003DMG401005669 | PGSC:PGSC0003DMG401005669 | EnsemblPlants:PGSC0003DMT400014451 |
| PFscan:PS50244 | PANTHER:PTHR32251 | PANTHER:PTHR32251:SF15 | TMHMM:TMhelix | UniParc:UPI000296174F | SEG:seg |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG401005669]
Coordinates
chr3:-:58341194..58345759
Molecular Weight (calculated)
36786.3 Da
IEP (calculated)
8.431
GRAVY (calculated)
0.530
Length
320 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSHFLGLTA IVTVSTYFFP CFLVIFLDGA LGYDPLFFLF CFFLQLGYQL TFFIITALFR FDKVTDFAGG TNFIILAILT LVLKGSWHFR QVVLSLFVVI
101: WGLRLGLFLL MRILQWGEDR RFDDKRDNLG KLAIFWILQA IWVWTVSLPV TVVNASDKQP SVQDQDIIGW IMWIIGILVE ITADQQKLAF KNSSENRGKW
201: CSVGLWKYSR HPNYFGEILL WWGVFLASTP VLEGAEWLVV FGPVFITLLL LFVSGIPLLE ASGDKKFGNV AAYRSYKRKT SPLTLLPPGV YGSLPQWFKT
301: ILLFEFPLYS RNLPQEELSW
101: WGLRLGLFLL MRILQWGEDR RFDDKRDNLG KLAIFWILQA IWVWTVSLPV TVVNASDKQP SVQDQDIIGW IMWIIGILVE ITADQQKLAF KNSSENRGKW
201: CSVGLWKYSR HPNYFGEILL WWGVFLASTP VLEGAEWLVV FGPVFITLLL LFVSGIPLLE ASGDKKFGNV AAYRSYKRKT SPLTLLPPGV YGSLPQWFKT
301: ILLFEFPLYS RNLPQEELSW
001: MGTVLDSHFL ALTAIVTVIY QFIFFVITAL FKFDQVTDFA GSTNFVILAV LTLVLKASWH FRQIVLTLLV VVWGLRLGIF LLMRILQWGE DRRFDEQRGN
101: IVRLIIFWTL QAVWVWTVSL PLTLVNASDG GGSLKPADVI GWTMWVFGFL IEAAADQQKL SFKNSPENRG KWCDVGVWKY SRHPNYFGEM LLWWGIFVAA
201: SPVLEGAEYL VIFGPLFLTL LLLFVSGIPL LEASADKKHG NSGAYRSYKK TTSPLILFPR GVYGNLPGWF KTVFLFEFPF YSRNLPQEVA V
101: IVRLIIFWTL QAVWVWTVSL PLTLVNASDG GGSLKPADVI GWTMWVFGFL IEAAADQQKL SFKNSPENRG KWCDVGVWKY SRHPNYFGEM LLWWGIFVAA
201: SPVLEGAEYL VIFGPLFLTL LLLFVSGIPL LEASADKKHG NSGAYRSYKK TTSPLILFPR GVYGNLPGWF KTVFLFEFPF YSRNLPQEVA V
Arabidopsis Description
Protein of unknown function (DUF1295) [Source:TAIR;Acc:AT1G73650]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.