Factsheet for Os03t0708400-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
extracellular 3
endoplasmic reticulum 4
vacuole 4
plasma membrane 5
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	plasma membrane
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	plasma membrane

plasma membrane: 18557835
nucleus: 19621931
plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 18557835 doi

SA Whiteman, TS Nühse, DA Ashford, D Sanders, FJ Maathuis

Department of Biology Area 9, University of York, York YO10 5DD, UK.

msms PMID: 19621931 doi

T Aki, S Yanagisawa

Department of Applied Biological Chemistry, The University of Tokyo, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G043600.1	Wheat	extracellular, plasma membrane, vacuole	87.63	87.63
TraesCS4A01G270500.1	Wheat	extracellular, plasma membrane, vacuole	87.29	87.29
HORVU4Hr1G007090.1	Barley	extracellular, plasma membrane, vacuole	87.29	87.29
TraesCS4D01G041100.1	Wheat	extracellular, plasma membrane, vacuole	87.29	87.29
Zm00001d013456_P001	Maize	endoplasmic reticulum, plasma membrane, vacuole	86.25	86.25
KXG37747	Sorghum	endoplasmic reticulum, plasma membrane, vacuole	86.6	86.01
Solyc06g068970.2.1	Tomato	nucleus	77.32	78.4
PGSC0003DMT400074062	Potato	plasma membrane	76.63	77.7
VIT_17s0000g02520.t01	Wine grape	plasma membrane	80.07	75.9
Bra015977.1-P	Field mustard	plasma membrane	72.85	72.85
CDX96490	Canola	endoplasmic reticulum, plasma membrane, vacuole	60.82	72.84
CDX72998	Canola	plasma membrane	72.16	72.16
Bra008106.1-P	Field mustard	endoplasmic reticulum, plasma membrane, vacuole	72.51	72.01
GSMUA_Achr7P11890_001	Banana	plasma membrane	79.04	71.43
CDX82058	Canola	endoplasmic reticulum, plasma membrane, vacuole	71.82	71.33
CDY47744	Canola	endoplasmic reticulum, plasma membrane, vacuole	71.13	70.89
KRH41812	Soybean	endoplasmic reticulum, plasma membrane, vacuole	70.45	70.45
Solyc03g118830.2.1	Tomato	plasma membrane	73.54	70.39
Bra025926.1-P	Field mustard	plasma membrane	69.42	69.18
CDY26182	Canola	plasma membrane	69.07	68.84
CDY19194	Canola	plasma membrane	69.07	68.84
AT1G73650.3	Thale cress	plasma membrane	71.13	68.54
PGSC0003DMT400014451	Potato	plasma membrane	74.57	67.81
KRH60513	Soybean	plasma membrane	70.79	67.32
AT1G18180.1	Thale cress	plasma membrane	70.1	66.89
PGSC0003DMT400014452	Potato	cytosol, golgi, plasma membrane	50.86	58.5
Os04t0105300-01	Rice	cytosol, nucleus, plastid	24.74	25.09

Protein Annotations

Gene3D:1.20.120.1630	InterPro:3-oxo-5_a-steroid_4-DH_C	MapMan:35.2	EntrezGene:4333864	ProteinID:AAK50129.1	ProteinID:ABF98482.1
EMBL:AK066216	ProteinID:BAF12950.1	ProteinID:BAS85995.1	InterPro:DUF1295	ProteinID:EAZ28317.1	GO:GO:0003674
GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006629
GO:GO:0008150	GO:GO:0008152	GO:GO:0016020	GO:GO:0016021	GO:GO:0016627	GO:GO:0055114
InterPro:IPR001104	EnsemblPlantsGene:Os03g0708400	EnsemblPlants:Os03t0708400-01	PFAM:PF06966	PFscan:PS50244	PANTHER:PTHR32251
PANTHER:PTHR32251:SF15	UniProt:Q10E47	TMHMM:TMhelix	UniParc:UPI00000A3FAD	RefSeq:XP_015632877.1	SEG:seg

Description

Protein of unknown function DUF1295 family protein. (Os03t0708400-01)

Coordinates

chr3:+:28561107..28564805

Molecular Weight (calculated)

32992.6 Da

IEP (calculated)

8.422

GRAVY (calculated)

0.474

Length

291 amino acids

Sequence
(BLAST)

001: MGTVLDSHFL ALTAIVTVGY QLVFFIITAL LRFDKVTDFA GSTNFIILAI LTLALKGAWH FRQVVLTVLV VIWGLRLGLF LLMRILQWGE DKRFDEMRDN
101: LGKLAVFWIF QAVWVWTVSL PVTIVNASDS DPSIEARDII GWIMWLIGAG MEAIADQQKL TFKNSPSNRG RWCNVGLWSY TRHPNYFGEI FLWWGIFVAS
201: TPVLSGAEWL VILGPVFLTL LLLFVSGIPL LEASADKRFG QNEEYRTYKN TTSPLIPLPP AVYGALPGWF KMGFLFELPL YNRVPQRDPV S

Best Arabidopsis Sequence Match ( AT1G73650.2 )
(BLAST)

001: MGTVLDSHFL ALTAIVTVIY QFIFFVITAL FKFDQVTDFA GSTNFVILAV LTLVLKASWH FRQIVLTLLV VVWGLRLGIF LLMRILQWGE DRRFDEQRGN
101: IVRLIIFWTL QAVWVWTVSL PLTLVNASDG GGSLKPADVI GWTMWVFGFL IEAAADQQKL SFKNSPENRG KWCDVGVWKY SRHPNYFGEM LLWWGIFVAA
201: SPVLEGAEYL VIFGPLFLTL LLLFVSGIPL LEASADKKHG NSGAYRSYKK TTSPLILFPR GVYGNLPGWF KTVFLFEFPF YSRNLPQEVA V

Arabidopsis Description

Protein of unknown function (DUF1295) [Source:TAIR;Acc:AT1G73650]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.