Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, vacuole, plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- extracellular 4
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 5
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY47744 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 94.54 | 94.86 |
| CDX72998 | Canola | plasma membrane | 88.4 | 89.0 |
| CDX96490 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 72.01 | 86.83 |
| AT1G73650.3 | Thale cress | plasma membrane | 88.4 | 85.76 |
| CDY19194 | Canola | plasma membrane | 78.5 | 78.77 |
| CDY26182 | Canola | plasma membrane | 77.47 | 77.74 |
| VIT_17s0000g02520.t01 | Wine grape | plasma membrane | 78.5 | 74.92 |
| PGSC0003DMT400074062 | Potato | plasma membrane | 70.99 | 72.47 |
| Solyc06g068970.2.1 | Tomato | nucleus | 70.65 | 72.13 |
| Os03t0708400-01 | Rice | plasma membrane | 71.33 | 71.82 |
| KXG37747 | Sorghum | endoplasmic reticulum, plasma membrane, vacuole | 71.67 | 71.67 |
| KRH41812 | Soybean | endoplasmic reticulum, plasma membrane, vacuole | 70.31 | 70.79 |
| HORVU4Hr1G007090.1 | Barley | extracellular, plasma membrane, vacuole | 70.31 | 70.79 |
| TraesCS4B01G043600.1 | Wheat | extracellular, plasma membrane, vacuole | 70.31 | 70.79 |
| Zm00001d013456_P001 | Maize | endoplasmic reticulum, plasma membrane, vacuole | 69.97 | 70.45 |
| TraesCS4D01G041100.1 | Wheat | extracellular, plasma membrane, vacuole | 69.62 | 70.1 |
| TraesCS4A01G270500.1 | Wheat | extracellular, plasma membrane, vacuole | 69.28 | 69.76 |
| Solyc03g118830.2.1 | Tomato | plasma membrane | 70.65 | 68.09 |
| KRH60513 | Soybean | plasma membrane | 69.97 | 66.99 |
| GSMUA_Achr7P11890_001 | Banana | plasma membrane | 73.38 | 66.77 |
| PGSC0003DMT400014451 | Potato | plasma membrane | 69.97 | 64.06 |
| PGSC0003DMT400014452 | Potato | cytosol, golgi, plasma membrane | 46.42 | 53.75 |
| CDX80055 | Canola | plasma membrane | 24.57 | 22.22 |
Protein Annotations
| Gene3D:1.20.120.1630 | InterPro:3-oxo-5_a-steroid_4-DH_C | MapMan:35.2 | GO:A0A078D473 | EnsemblPlants:CDX82058 | ProteinID:CDX82058 |
| ProteinID:CDX82058.1 | InterPro:DUF1295 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006629 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0016020 |
| GO:GO:0016021 | GO:GO:0016627 | EnsemblPlantsGene:GSBRNA2T00137071001 | InterPro:IPR001104 | PFAM:PF06966 | PFscan:PS50244 |
| PANTHER:PTHR32251 | PANTHER:PTHR32251:SF15 | TMHMM:TMhelix | UniParc:UPI0004EE8728 | SEG:seg | : |
Description
BnaC02g22320D
Coordinates
chrLK031827:+:308126..310198
Molecular Weight (calculated)
33046.9 Da
IEP (calculated)
9.286
GRAVY (calculated)
0.512
Length
293 amino acids
Sequence
(BLAST)
(BLAST)
001: MGTVLDSHFL ALTAIVTVVY QFIFFLITAL FKIDQVTDFA GSTNFVILAL LTLVLKATWH FRQIVLTLLV VVWGLRLGIF LLMRILQWGE DRRFDEMRGN
101: LVKLLVFWTL QAMWVWTVSL PLTVVNAASD GRGSLKPADV IGWTMWVLGF LTEAAADQQK LSFKNSPENR GKWCDVGVWK YSRHPNYFGE ILLWWGIFVA
201: ASPALEGAEY LVIIGPLFLT LLLLFVSGIP LLEASSDKKH GNLGAYRFYK KTTSPLIPLP RGVYGNLPGW CKPVFLLELP FYSRSLPEEA AVS
101: LVKLLVFWTL QAMWVWTVSL PLTVVNAASD GRGSLKPADV IGWTMWVLGF LTEAAADQQK LSFKNSPENR GKWCDVGVWK YSRHPNYFGE ILLWWGIFVA
201: ASPALEGAEY LVIIGPLFLT LLLLFVSGIP LLEASSDKKH GNLGAYRFYK KTTSPLIPLP RGVYGNLPGW CKPVFLLELP FYSRSLPEEA AVS
001: MGTVLDSHFL ALTAIVTVIY QFIFFVITAL FKFDQVTDFA GSTNFVILAV LTLVLKASWH FRQIVLTLLV VVWGLRLGIF LLMRILQWGE DRRFDEQRGN
101: IVRLIIFWTL QAVWVWTVSL PLTLVNASDG GGSLKPADVI GWTMWVFGFL IEAAADQQKL SFKNSPENRG KWCDVGVWKY SRHPNYFGEM LLWWGIFVAA
201: SPVLEGAEYL VIFGPLFLTL LLLFVSGIPL LEASADKKHG NSGAYRSYKK TTSPLILFPR GVYGNLPGWF KTVFLFEFPF YSRNLPQEVA V
101: IVRLIIFWTL QAVWVWTVSL PLTLVNASDG GGSLKPADVI GWTMWVFGFL IEAAADQQKL SFKNSPENRG KWCDVGVWKY SRHPNYFGEM LLWWGIFVAA
201: SPVLEGAEYL VIFGPLFLTL LLLFVSGIPL LEASADKKHG NSGAYRSYKK TTSPLILFPR GVYGNLPGWF KTVFLFEFPF YSRNLPQEVA V
Arabidopsis Description
Protein of unknown function (DUF1295) [Source:TAIR;Acc:AT1G73650]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.