Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 1
- extracellular 5
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 6
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra008106.1-P | Field mustard | endoplasmic reticulum, plasma membrane, vacuole | 87.75 | 90.44 |
| CDY47744 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 86.75 | 89.73 |
| Bra015977.1-P | Field mustard | plasma membrane | 86.09 | 89.35 |
| CDX72998 | Canola | plasma membrane | 85.43 | 88.66 |
| CDX96490 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 71.19 | 88.48 |
| CDX82058 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 85.76 | 88.4 |
| AT1G18180.1 | Thale cress | plasma membrane | 78.48 | 77.7 |
| VIT_17s0000g02520.t01 | Wine grape | plasma membrane | 77.15 | 75.9 |
| PGSC0003DMT400074062 | Potato | plasma membrane | 70.86 | 74.56 |
| KRH41812 | Soybean | endoplasmic reticulum, plasma membrane, vacuole | 71.19 | 73.88 |
| Solyc06g068970.2.1 | Tomato | nucleus | 70.2 | 73.87 |
| Os03t0708400-01 | Rice | plasma membrane | 68.54 | 71.13 |
| Solyc03g118830.2.1 | Tomato | plasma membrane | 71.52 | 71.05 |
| KXG37747 | Sorghum | endoplasmic reticulum, plasma membrane, vacuole | 68.87 | 70.99 |
| TraesCS4B01G043600.1 | Wheat | extracellular, plasma membrane, vacuole | 67.88 | 70.45 |
| TraesCS4D01G041100.1 | Wheat | extracellular, plasma membrane, vacuole | 67.22 | 69.76 |
| KRH60513 | Soybean | plasma membrane | 70.53 | 69.61 |
| TraesCS4A01G270500.1 | Wheat | extracellular, plasma membrane, vacuole | 66.89 | 69.42 |
| HORVU4Hr1G007090.1 | Barley | extracellular, plasma membrane, vacuole | 66.23 | 68.73 |
| GSMUA_Achr7P11890_001 | Banana | plasma membrane | 73.18 | 68.63 |
| Zm00001d013456_P001 | Maize | endoplasmic reticulum, plasma membrane, vacuole | 65.89 | 68.38 |
| PGSC0003DMT400014451 | Potato | plasma membrane | 70.53 | 66.56 |
| PGSC0003DMT400014452 | Potato | cytosol, golgi, plasma membrane | 45.03 | 53.75 |
| AT2G46890.1 | Thale cress | plasma membrane | 23.18 | 21.74 |
Protein Annotations
| Gene3D:1.20.120.1630 | InterPro:3-oxo-5_a-steroid_4-DH_C | MapMan:35.2 | EntrezGene:843699 | ProteinID:AEE35491.1 | ArrayExpress:AT1G73650 |
| EnsemblPlantsGene:AT1G73650 | RefSeq:AT1G73650 | TAIR:AT1G73650 | RefSeq:AT1G73650-TAIR-G | EnsemblPlants:AT1G73650.3 | TAIR:AT1G73650.3 |
| Unigene:At.17986 | InterPro:DUF1295 | UniProt:F4HRY1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005773 | GO:GO:0005774 | GO:GO:0005783 |
| GO:GO:0005794 | GO:GO:0005886 | GO:GO:0006629 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009506 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016627 | GO:GO:0055114 | InterPro:IPR001104 | RefSeq:NP_974140.1 |
| PFAM:PF06966 | PO:PO:0000005 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PFscan:PS50244 | PANTHER:PTHR32251 | PANTHER:PTHR32251:SF15 |
| TMHMM:TMhelix | UniParc:UPI000034F539 | SEG:seg | : | : | : |
Description
Protein of unknown function (DUF1295) [Source:TAIR;Acc:AT1G73650]
Coordinates
chr1:-:27688123..27690307
Molecular Weight (calculated)
34419.2 Da
IEP (calculated)
9.474
GRAVY (calculated)
0.363
Length
302 amino acids
Sequence
(BLAST)
(BLAST)
001: MGTVLDSHFL ALTAIVTVIY QFIFFVITAL FKFDQVTDFA GSTNFVILAV LTLVLKASWH FRQIVLTLLV VVWGLRLGIF LLMRILQWGE DRRFDEQRGN
101: IVRLIIFWTL QAVWVWTVSL PLTLVNASDG GGSLKPADVI GWTMWVFGFL IEAAADQQKL SFKNSPENRG KWCDVGVWKY SRHPNYFGEM LLWWGIFVAA
201: SPVLEGAEYL VIFGPLFLTL LLLFVSGIPL LEASADKKHG NSGAYRSYKK TTSPLILFPR GVYGNLPGWF KTVFLFEFPF YSRNLPQEGR LQNSKEKEVK
301: DD
101: IVRLIIFWTL QAVWVWTVSL PLTLVNASDG GGSLKPADVI GWTMWVFGFL IEAAADQQKL SFKNSPENRG KWCDVGVWKY SRHPNYFGEM LLWWGIFVAA
201: SPVLEGAEYL VIFGPLFLTL LLLFVSGIPL LEASADKKHG NSGAYRSYKK TTSPLILFPR GVYGNLPGWF KTVFLFEFPF YSRNLPQEGR LQNSKEKEVK
301: DD
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.