Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 6
- vacuole 5
- plasma membrane 7
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX96490 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 77.32 | 92.59 |
| CDY47744 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 90.03 | 89.73 |
| CDX82058 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 89.0 | 88.4 |
| AT1G73650.3 | Thale cress | plasma membrane | 88.66 | 85.43 |
| CDY19194 | Canola | plasma membrane | 80.76 | 80.48 |
| CDY26182 | Canola | plasma membrane | 79.73 | 79.45 |
| VIT_17s0000g02520.t01 | Wine grape | plasma membrane | 78.01 | 73.94 |
| PGSC0003DMT400074062 | Potato | plasma membrane | 71.48 | 72.47 |
| Os03t0708400-01 | Rice | plasma membrane | 72.16 | 72.16 |
| Solyc06g068970.2.1 | Tomato | nucleus | 71.13 | 72.13 |
| KXG37747 | Sorghum | endoplasmic reticulum, plasma membrane, vacuole | 71.13 | 70.65 |
| TraesCS4B01G043600.1 | Wheat | extracellular, plasma membrane, vacuole | 70.45 | 70.45 |
| TraesCS4D01G041100.1 | Wheat | extracellular, plasma membrane, vacuole | 69.76 | 69.76 |
| KRH41812 | Soybean | endoplasmic reticulum, plasma membrane, vacuole | 69.76 | 69.76 |
| Zm00001d013456_P001 | Maize | endoplasmic reticulum, plasma membrane, vacuole | 69.42 | 69.42 |
| TraesCS4A01G270500.1 | Wheat | extracellular, plasma membrane, vacuole | 69.42 | 69.42 |
| HORVU4Hr1G007090.1 | Barley | extracellular, plasma membrane, vacuole | 69.42 | 69.42 |
| Solyc03g118830.2.1 | Tomato | plasma membrane | 71.13 | 68.09 |
| GSMUA_Achr7P11890_001 | Banana | plasma membrane | 74.91 | 67.7 |
| KRH60513 | Soybean | plasma membrane | 69.42 | 66.01 |
| PGSC0003DMT400014451 | Potato | plasma membrane | 70.45 | 64.06 |
| PGSC0003DMT400014452 | Potato | cytosol, golgi, plasma membrane | 45.02 | 51.78 |
| CDX80055 | Canola | plasma membrane | 23.37 | 20.99 |
Protein Annotations
| Gene3D:1.20.120.1630 | InterPro:3-oxo-5_a-steroid_4-DH_C | MapMan:35.2 | GO:A0A078CDF3 | EnsemblPlants:CDX72998 | ProteinID:CDX72998 |
| ProteinID:CDX72998.1 | InterPro:DUF1295 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006629 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0016020 |
| GO:GO:0016021 | GO:GO:0016627 | EnsemblPlantsGene:GSBRNA2T00103436001 | InterPro:IPR001104 | PFAM:PF06966 | PFscan:PS50244 |
| PANTHER:PTHR32251 | PANTHER:PTHR32251:SF15 | TMHMM:TMhelix | UniParc:UPI0004EDB8F1 | SEG:seg | : |
Description
BnaC06g34460D
Coordinates
chrLK031797:-:1584565..1586455
Molecular Weight (calculated)
33101.6 Da
IEP (calculated)
7.618
GRAVY (calculated)
0.503
Length
291 amino acids
Sequence
(BLAST)
(BLAST)
001: MGTVLDSHFL ALTAIVTVVY QFIFFVITAL FKIDQVTDFA GSTNFVILAV LTLVLNATWH FRQVVLTLLV VVWGLRLGTF LLMRILQWGE DRRFDEMRQN
101: LVKLIVFWTF QAVWVWTVSL PLTVVNASDG GGSFKPADVI GWTMWVFGFL IEAAADQQKL SFKSAPENRG KWCDAGLWRY SRHPNYFGEM LLWWGIFVAT
201: SPVLEGAEYL VIFGPVFLTL LLLFVSGIPL LEASADKKHG HLGAYRFYKK TTSPLVLLPR GVYGNLPGWC KEVFLFELPF YSRNLPEEAD I
101: LVKLIVFWTF QAVWVWTVSL PLTVVNASDG GGSFKPADVI GWTMWVFGFL IEAAADQQKL SFKSAPENRG KWCDAGLWRY SRHPNYFGEM LLWWGIFVAT
201: SPVLEGAEYL VIFGPVFLTL LLLFVSGIPL LEASADKKHG HLGAYRFYKK TTSPLVLLPR GVYGNLPGWC KEVFLFELPF YSRNLPEEAD I
001: MGTVLDSHFL ALTAIVTVIY QFIFFVITAL FKFDQVTDFA GSTNFVILAV LTLVLKASWH FRQIVLTLLV VVWGLRLGIF LLMRILQWGE DRRFDEQRGN
101: IVRLIIFWTL QAVWVWTVSL PLTLVNASDG GGSLKPADVI GWTMWVFGFL IEAAADQQKL SFKNSPENRG KWCDVGVWKY SRHPNYFGEM LLWWGIFVAA
201: SPVLEGAEYL VIFGPLFLTL LLLFVSGIPL LEASADKKHG NSGAYRSYKK TTSPLILFPR GVYGNLPGWF KTVFLFEFPF YSRNLPQEGR LQNSKEKEVK
301: DD
101: IVRLIIFWTL QAVWVWTVSL PLTLVNASDG GGSLKPADVI GWTMWVFGFL IEAAADQQKL SFKNSPENRG KWCDVGVWKY SRHPNYFGEM LLWWGIFVAA
201: SPVLEGAEYL VIFGPLFLTL LLLFVSGIPL LEASADKKHG NSGAYRSYKK TTSPLILFPR GVYGNLPGWF KTVFLFEFPF YSRNLPQEGR LQNSKEKEVK
301: DD
Arabidopsis Description
Protein of unknown function (DUF1295) [Source:TAIR;Acc:AT1G73650]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.