Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 1
- extracellular 3
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 5
- golgi 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400074062 | Potato | plasma membrane | 96.17 | 96.17 |
| Os03t0708400-01 | Rice | plasma membrane | 78.4 | 77.32 |
| Solyc03g118830.2.1 | Tomato | plasma membrane | 81.88 | 77.3 |
| VIT_17s0000g02520.t01 | Wine grape | plasma membrane | 81.88 | 76.55 |
| KXG37747 | Sorghum | endoplasmic reticulum, plasma membrane, vacuole | 78.05 | 76.45 |
| Zm00001d013456_P001 | Maize | endoplasmic reticulum, plasma membrane, vacuole | 77.0 | 75.94 |
| TraesCS4B01G043600.1 | Wheat | extracellular, plasma membrane, vacuole | 74.91 | 73.88 |
| CDX96490 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 62.37 | 73.66 |
| KRH41812 | Soybean | endoplasmic reticulum, plasma membrane, vacuole | 74.56 | 73.54 |
| HORVU4Hr1G007090.1 | Barley | extracellular, plasma membrane, vacuole | 74.56 | 73.54 |
| Bra015977.1-P | Field mustard | plasma membrane | 74.56 | 73.54 |
| TraesCS4D01G041100.1 | Wheat | extracellular, plasma membrane, vacuole | 74.22 | 73.2 |
| TraesCS4A01G270500.1 | Wheat | extracellular, plasma membrane, vacuole | 73.87 | 72.85 |
| Bra008106.1-P | Field mustard | endoplasmic reticulum, plasma membrane, vacuole | 73.17 | 71.67 |
| CDY19194 | Canola | plasma membrane | 72.47 | 71.23 |
| Bra025926.1-P | Field mustard | plasma membrane | 72.47 | 71.23 |
| CDX72998 | Canola | plasma membrane | 72.13 | 71.13 |
| CDY47744 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 72.13 | 70.89 |
| CDY26182 | Canola | plasma membrane | 72.13 | 70.89 |
| CDX82058 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 72.13 | 70.65 |
| KRH60513 | Soybean | plasma membrane | 75.26 | 70.59 |
| AT1G73650.3 | Thale cress | plasma membrane | 73.87 | 70.2 |
| AT1G18180.1 | Thale cress | plasma membrane | 72.82 | 68.52 |
| GSMUA_Achr7P11890_001 | Banana | plasma membrane | 76.66 | 68.32 |
| Solyc02g063390.2.1 | Tomato | plasma membrane | 21.95 | 19.81 |
| Solyc01g005320.2.1 | Tomato | plasma membrane | 18.12 | 16.15 |
Protein Annotations
| Gene3D:1.20.120.1630 | InterPro:3-oxo-5_a-steroid_4-DH_C | MapMan:35.2 | InterPro:DUF1295 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006629 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016627 | GO:GO:0055114 | InterPro:IPR001104 |
| UniProt:K4C870 | PFAM:PF06966 | PFscan:PS50244 | PANTHER:PTHR32251 | PANTHER:PTHR32251:SF15 | EnsemblPlantsGene:Solyc06g068970.2 |
| EnsemblPlants:Solyc06g068970.2.1 | TMHMM:TMhelix | UniParc:UPI0002766777 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr6:-:42787346..42789696
Molecular Weight (calculated)
32743.4 Da
IEP (calculated)
8.398
GRAVY (calculated)
0.521
Length
287 amino acids
Sequence
(BLAST)
(BLAST)
001: MGTVIDSHFL GLTAIVTVVY QLIFFIITAL LKFDKVTDFA GGTNFIVLAV LTLILKGSWN FRQVVLSVFV VIWGLRLGLF LLMRILQWGE DRRFDDKRDN
101: LGKLAIFWLF QAIWVWTVSL PVTVVNASDH QPSVQTVDII GWIMWSIGIS VEIASDQQKL TFKNSPENRG KWCNVGLWKY SRHPNYFGEI FLWWGIFVAS
201: TPVLEGAEWL VVLGPVFLTL LLLFVSGIPL LEESADKKYG NVAEYIIYKD TTSPLILLPP GLYGKLPSWF KTIFLLEFPL YSRNLSQ
101: LGKLAIFWLF QAIWVWTVSL PVTVVNASDH QPSVQTVDII GWIMWSIGIS VEIASDQQKL TFKNSPENRG KWCNVGLWKY SRHPNYFGEI FLWWGIFVAS
201: TPVLEGAEWL VVLGPVFLTL LLLFVSGIPL LEESADKKYG NVAEYIIYKD TTSPLILLPP GLYGKLPSWF KTIFLLEFPL YSRNLSQ
001: MGTVLDSHFL ALTAIVTVIY QFIFFVITAL FKFDQVTDFA GSTNFVILAV LTLVLKASWH FRQIVLTLLV VVWGLRLGIF LLMRILQWGE DRRFDEQRGN
101: IVRLIIFWTL QAVWVWTVSL PLTLVNASDG GGSLKPADVI GWTMWVFGFL IEAAADQQKL SFKNSPENRG KWCDVGVWKY SRHPNYFGEM LLWWGIFVAA
201: SPVLEGAEYL VIFGPLFLTL LLLFVSGIPL LEASADKKHG NSGAYRSYKK TTSPLILFPR GVYGNLPGWF KTVFLFEFPF YSRNLPQEVA V
101: IVRLIIFWTL QAVWVWTVSL PLTLVNASDG GGSLKPADVI GWTMWVFGFL IEAAADQQKL SFKNSPENRG KWCDVGVWKY SRHPNYFGEM LLWWGIFVAA
201: SPVLEGAEYL VIFGPLFLTL LLLFVSGIPL LEASADKKHG NSGAYRSYKK TTSPLILFPR GVYGNLPGWF KTVFLFEFPF YSRNLPQEVA V
Arabidopsis Description
Protein of unknown function (DUF1295) [Source:TAIR;Acc:AT1G73650]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.