Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- extracellular 5
- golgi 5
- plasma membrane 7
- endoplasmic reticulum 6
- vacuole 5
- cytosol 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc02g071920.2.1 | |
| Solyc03g005980.2.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G46890.1 | Solyc02g071920.2.1 | AT4G19030.1 | 21798944 |
| AT2G46890.1 | Solyc03g005980.2.1 | AT4G19030.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400026984 | Potato | plasma membrane | 94.03 | 94.03 |
| VIT_15s0048g02220.t01 | Wine grape | plasma membrane | 72.64 | 71.96 |
| AT2G46890.1 | Thale cress | plasma membrane | 70.13 | 69.25 |
| KRH06317 | Soybean | plasma membrane | 68.55 | 67.08 |
| KRH47737 | Soybean | plasma membrane | 68.24 | 66.77 |
| CDX80055 | Canola | plasma membrane | 67.92 | 66.67 |
| Bra004499.1-P | Field mustard | plasma membrane | 67.61 | 66.36 |
| KRG97275 | Soybean | mitochondrion | 65.72 | 65.93 |
| HORVU2Hr1G093180.1 | Barley | golgi, mitochondrion, plasma membrane | 43.08 | 65.87 |
| Solyc01g005320.2.1 | Tomato | plasma membrane | 64.47 | 63.66 |
| EES10337 | Sorghum | plasma membrane | 62.89 | 62.5 |
| TraesCS2B01G051300.1 | Wheat | plasma membrane | 61.64 | 61.25 |
| TraesCS2D01G037000.1 | Wheat | plasma membrane | 61.32 | 60.37 |
| TraesCS2A01G038000.1 | Wheat | plasma membrane | 61.01 | 59.51 |
| GSMUA_Achr1P00860_001 | Banana | cytosol, endoplasmic reticulum, peroxisome | 65.72 | 58.38 |
| Zm00001d024925_P001 | Maize | plasma membrane | 62.89 | 56.98 |
| HORVU2Hr1G005680.1 | Barley | endoplasmic reticulum, plasma membrane | 60.38 | 55.17 |
| Os04t0105300-01 | Rice | cytosol, nucleus, plastid | 47.48 | 52.61 |
| Solyc06g068970.2.1 | Tomato | nucleus | 19.81 | 21.95 |
| Solyc03g118830.2.1 | Tomato | plasma membrane | 20.75 | 21.71 |
Protein Annotations
| Gene3D:1.20.120.1630 | InterPro:3-oxo-5_a-steroid_4-DH_C | MapMan:35.2 | InterPro:DUF1295 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006629 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016627 | GO:GO:0055114 | InterPro:IPR001104 |
| UniProt:K4B6M4 | PFAM:PF06966 | PFscan:PS50244 | PANTHER:PTHR32251 | PANTHER:PTHR32251:SF14 | EnsemblPlantsGene:Solyc02g063390.2 |
| EnsemblPlants:Solyc02g063390.2.1 | TMHMM:TMhelix | UniParc:UPI0002768668 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr2:+:35485159..35487345
Molecular Weight (calculated)
38487.5 Da
IEP (calculated)
9.247
GRAVY (calculated)
0.053
Length
318 amino acids
Sequence
(BLAST)
(BLAST)
001: MATHSNLKNA LIAFLAPLPS LLFYLSFLRH YHEDHPIYNW CYHHPLLFAN VLFFFNVNIL FYAISYIQSS HWMIDLFWTV IPVMLVHFYA NHPLAQYNVW
101: RSKVVILLTW IWSIRLTHNY FRRENWQWGH RQDWRFTDMS HQYGKNWWWI SFFFVYFSQQ IFLIGICLPM YVVHSEDKPW NIWDFIAVFI CLSAIIIAYY
201: ADTELYNFVS RNQKLKELGK PMVPNLDEGL WRYSRHPNYF GEQLWWWGLV LFAWNLGQTW TFVGALANSL CLAHVTVLVE NRMLKQAYRA EAYKLYQRTT
301: SVWIPWFKSS AKGKDKET
101: RSKVVILLTW IWSIRLTHNY FRRENWQWGH RQDWRFTDMS HQYGKNWWWI SFFFVYFSQQ IFLIGICLPM YVVHSEDKPW NIWDFIAVFI CLSAIIIAYY
201: ADTELYNFVS RNQKLKELGK PMVPNLDEGL WRYSRHPNYF GEQLWWWGLV LFAWNLGQTW TFVGALANSL CLAHVTVLVE NRMLKQAYRA EAYKLYQRTT
301: SVWIPWFKSS AKGKDKET
001: MNRNLRNAIV AFLAPLPSIV FYLTFLSNYS SSSDSELSSI QSWCLNHPLL LANLLFFLNV NVLFWVIGLL QSSHWMIDVY WTVIPVMLVH YFASHPLSQY
101: NKLRSMIVIT LTWIWSIRLT HNYFRRENWE WGAREDWRFN DLRKQYGKHW WWLSFFSVYV SQQIFLIGIC LPLYVIHSID EPLNIWDFIS SAICLTGIVM
201: AYFADTQLHE FVTGNQKLKE QGKPKIPNLD SGLWRYSRHP NYLGEQLWWW GLVIFAWNLG QGWTLIGALV NTLCLVYVTI LVERRMVKQQ YRAEAYRAYQ
301: KTTSVWIPWF KSHAAATKDK NT
101: NKLRSMIVIT LTWIWSIRLT HNYFRRENWE WGAREDWRFN DLRKQYGKHW WWLSFFSVYV SQQIFLIGIC LPLYVIHSID EPLNIWDFIS SAICLTGIVM
201: AYFADTQLHE FVTGNQKLKE QGKPKIPNLD SGLWRYSRHP NYLGEQLWWW GLVIFAWNLG QGWTLIGALV NTLCLVYVTI LVERRMVKQQ YRAEAYRAYQ
301: KTTSVWIPWF KSHAAATKDK NT
Arabidopsis Description
3-oxo-5-alpha-steroid 4-dehydrogenase (DUF1295) [Source:UniProtKB/TrEMBL;Acc:O81042]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.