Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- extracellular 7
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 7
- golgi 5
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_10s0003g01830.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G46890.1 | VIT_10s0003g01830.t01 | AT4G19030.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc02g063390.2.1 | Tomato | plasma membrane | 71.96 | 72.64 |
| PGSC0003DMT400026984 | Potato | plasma membrane | 71.03 | 71.7 |
| KRH47737 | Soybean | plasma membrane | 71.96 | 71.08 |
| KRG97275 | Soybean | mitochondrion | 70.09 | 70.98 |
| KRH06317 | Soybean | plasma membrane | 71.34 | 70.46 |
| HORVU2Hr1G093180.1 | Barley | golgi, mitochondrion, plasma membrane | 44.55 | 68.75 |
| AT2G46890.1 | Thale cress | plasma membrane | 68.85 | 68.63 |
| Bra004499.1-P | Field mustard | plasma membrane | 67.29 | 66.67 |
| CDX80055 | Canola | plasma membrane | 67.29 | 66.67 |
| EES10337 | Sorghum | plasma membrane | 65.42 | 65.62 |
| TraesCS2B01G051300.1 | Wheat | plasma membrane | 63.86 | 64.06 |
| TraesCS2D01G037000.1 | Wheat | plasma membrane | 62.93 | 62.54 |
| TraesCS2A01G038000.1 | Wheat | plasma membrane | 63.24 | 62.27 |
| Solyc01g005320.2.1 | Tomato | plasma membrane | 61.99 | 61.8 |
| PGSC0003DMT400051424 | Potato | plasma membrane | 61.37 | 61.18 |
| GSMUA_Achr1P00860_001 | Banana | cytosol, endoplasmic reticulum, peroxisome | 66.04 | 59.22 |
| Zm00001d024925_P001 | Maize | plasma membrane | 63.55 | 58.12 |
| HORVU2Hr1G005680.1 | Barley | endoplasmic reticulum, plasma membrane | 62.62 | 57.76 |
| Os04t0105300-01 | Rice | cytosol, nucleus, plastid | 48.29 | 54.01 |
| VIT_17s0000g02520.t01 | Wine grape | plasma membrane | 21.18 | 22.15 |
Protein Annotations
| Gene3D:1.20.120.1630 | EntrezGene:104881860 | InterPro:3-oxo-5_a-steroid_4-DH_C | MapMan:35.2 | ProteinID:CBI38746 | ProteinID:CBI38746.3 |
| UniProt:D7U7G7 | InterPro:DUF1295 | EMBL:FN596739 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006629 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016627 | GO:GO:0055114 | InterPro:IPR001104 | PFAM:PF06966 |
| PFscan:PS50244 | PANTHER:PTHR32251 | PANTHER:PTHR32251:SF14 | TMHMM:TMhelix | UniParc:UPI00015CAAEF | ArrayExpress:VIT_15s0048g02220 |
| EnsemblPlantsGene:VIT_15s0048g02220 | EnsemblPlants:VIT_15s0048g02220.t01 | unigene:Vvi.12093 | RefSeq:XP_010661540.1 | SEG:seg | : |
Description
No Description!
Coordinates
chr15:+:16422238..16423593
Molecular Weight (calculated)
38133.2 Da
IEP (calculated)
9.434
GRAVY (calculated)
0.106
Length
321 amino acids
Sequence
(BLAST)
(BLAST)
001: MGNLKNVVIA LVTPLPSILF YLSFLNHYYQ NGNSTSSALW TWCLHHPLLL ANAFFFVNVN LLFWVIGLLQ SSHWMIDLYW TVIPVLLVHY YATHPLAQYD
101: WWRSRVVILM TWAWSMRLSH NYFRRERWQW GVREDWRFTD MRHQYGKNWW WVSFFAIYLS QQVFLIGVCL PFYAVHSVDK PWNIWDVVAV AVCVCGIVVA
201: YHADTELHNF VTRNDKLKGL GMPIVPNLDK GLWRYSRHPN YFGEQLWWWG LVIFGWNLGH GWTFVGSLIN SMCLAYVTIL VENRMLKQDY RAEAYRLYQK
301: TTSVWIPWFK SSPAGGKDKN T
101: WWRSRVVILM TWAWSMRLSH NYFRRERWQW GVREDWRFTD MRHQYGKNWW WVSFFAIYLS QQVFLIGVCL PFYAVHSVDK PWNIWDVVAV AVCVCGIVVA
201: YHADTELHNF VTRNDKLKGL GMPIVPNLDK GLWRYSRHPN YFGEQLWWWG LVIFGWNLGH GWTFVGSLIN SMCLAYVTIL VENRMLKQDY RAEAYRLYQK
301: TTSVWIPWFK SSPAGGKDKN T
001: MNRNLRNAIV AFLAPLPSIV FYLTFLSNYS SSSDSELSSI QSWCLNHPLL LANLLFFLNV NVLFWVIGLL QSSHWMIDVY WTVIPVMLVH YFASHPLSQY
101: NKLRSMIVIT LTWIWSIRLT HNYFRRENWE WGAREDWRFN DLRKQYGKHW WWLSFFSVYV SQQIFLIGIC LPLYVIHSID EPLNIWDFIS SAICLTGIVM
201: AYFADTQLHE FVTGNQKLKE QGKPKIPNLD SGLWRYSRHP NYLGEQLWWW GLVIFAWNLG QGWTLIGALV NTLCLVYVTI LVERRMVKQQ YRAEAYRAYQ
301: KTTSVWIPWF KSHAAATKDK NT
101: NKLRSMIVIT LTWIWSIRLT HNYFRRENWE WGAREDWRFN DLRKQYGKHW WWLSFFSVYV SQQIFLIGIC LPLYVIHSID EPLNIWDFIS SAICLTGIVM
201: AYFADTQLHE FVTGNQKLKE QGKPKIPNLD SGLWRYSRHP NYLGEQLWWW GLVIFAWNLG QGWTLIGALV NTLCLVYVTI LVERRMVKQQ YRAEAYRAYQ
301: KTTSVWIPWF KSHAAATKDK NT
Arabidopsis Description
3-oxo-5-alpha-steroid 4-dehydrogenase (DUF1295) [Source:UniProtKB/TrEMBL;Acc:O81042]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.