Factsheet for PGSC0003DMT400026984

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

extracellular 6
endoplasmic reticulum 6
vacuole 5
plasma membrane 7
golgi 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	plastid, secretory
BaCelLo:	secretory
EpiLoc:	extracellular
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400071510
PGSC0003DMT400073246

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G46890.1	PGSC0003DMT400071510	AT4G19030.1	21798944
AT2G46890.1	PGSC0003DMT400073246	AT4G19030.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g063390.2.1	Tomato	plasma membrane	94.03	94.03
VIT_15s0048g02220.t01	Wine grape	plasma membrane	71.7	71.03
AT2G46890.1	Thale cress	plasma membrane	69.18	68.32
KRH06317	Soybean	plasma membrane	69.18	67.69
KRH47737	Soybean	plasma membrane	69.18	67.69
KRG97275	Soybean	mitochondrion	65.72	65.93
PGSC0003DMT400051424	Potato	plasma membrane	66.35	65.53
CDX80055	Canola	plasma membrane	66.67	65.43
Bra004499.1-P	Field mustard	plasma membrane	66.35	65.12
HORVU2Hr1G093180.1	Barley	golgi, mitochondrion, plasma membrane	42.14	64.42
EES10337	Sorghum	plasma membrane	62.58	62.19
TraesCS2B01G051300.1	Wheat	plasma membrane	61.64	61.25
TraesCS2D01G037000.1	Wheat	plasma membrane	61.01	60.06
TraesCS2A01G038000.1	Wheat	plasma membrane	61.01	59.51
GSMUA_Achr1P00860_001	Banana	cytosol, endoplasmic reticulum, peroxisome	66.98	59.5
Zm00001d024925_P001	Maize	plasma membrane	63.21	57.27
HORVU2Hr1G005680.1	Barley	endoplasmic reticulum, plasma membrane	60.38	55.17
Os04t0105300-01	Rice	cytosol, nucleus, plastid	46.86	51.92
PGSC0003DMT400074062	Potato	plasma membrane	20.13	22.3
PGSC0003DMT400014451	Potato	plasma membrane	21.38	21.25
PGSC0003DMT400014452	Potato	cytosol, golgi, plasma membrane	16.67	20.95

Protein Annotations

Gene3D:1.20.120.1630	EntrezGene:102597624	InterPro:3-oxo-5_a-steroid_4-DH_C	MapMan:35.2	InterPro:DUF1295	GO:GO:0003674
GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006629
GO:GO:0008150	GO:GO:0008152	GO:GO:0016020	GO:GO:0016021	GO:GO:0016627	GO:GO:0055114
InterPro:IPR001104	UniProt:M1ANZ1	PFAM:PF06966	EnsemblPlantsGene:PGSC0003DMG400010408	PGSC:PGSC0003DMG400010408	EnsemblPlants:PGSC0003DMT400026984
PFscan:PS50244	PANTHER:PTHR32251	PANTHER:PTHR32251:SF14	TMHMM:TMhelix	UniParc:UPI000296B673	RefSeq:XP_006346890.1
SEG:seg	:	:	:	:	:

Description

Oxidoreductase [Source:PGSC_GENE;Acc:PGSC0003DMG400010408]

Coordinates

chr2:+:22333282..22335923

Molecular Weight (calculated)

38308.2 Da

IEP (calculated)

9.097

GRAVY (calculated)

0.039

Length

318 amino acids

Sequence
(BLAST)

001: MATHSNLKNA LIAFLAPLPS LLFYLSFLRH YHEDNPLYNW CYHHPLLFAN VLFFFNVNIL FYAIGYLQSS HWMIDLYWTV IPVMLVHFYA NHPLAQYNVW
101: RSKVVILLTW IWSIRLTHNY FRRENWQWGH RQDWRFTDMS HQFGKNWWWI SFFVVYFSQQ IFLIGICLPM YVVHSEDKPW NNWDFIAVFI CLSAIIIAYY
201: ADTELYNFVS GNQKLKELGK PMVPNLDEGL WKYSRHPNYF GEQLWWWGLF LFAWNLGQTW TFVGALANSL CLAHVTVLVE NRMLKQAYRA EAYKLYQRTT
301: SVWIPWFKSS AKGKDKET

Best Arabidopsis Sequence Match ( AT2G46890.1 )
(BLAST)

001: MNRNLRNAIV AFLAPLPSIV FYLTFLSNYS SSSDSELSSI QSWCLNHPLL LANLLFFLNV NVLFWVIGLL QSSHWMIDVY WTVIPVMLVH YFASHPLSQY
101: NKLRSMIVIT LTWIWSIRLT HNYFRRENWE WGAREDWRFN DLRKQYGKHW WWLSFFSVYV SQQIFLIGIC LPLYVIHSID EPLNIWDFIS SAICLTGIVM
201: AYFADTQLHE FVTGNQKLKE QGKPKIPNLD SGLWRYSRHP NYLGEQLWWW GLVIFAWNLG QGWTLIGALV NTLCLVYVTI LVERRMVKQQ YRAEAYRAYQ
301: KTTSVWIPWF KSHAAATKDK NT

Arabidopsis Description

3-oxo-5-alpha-steroid 4-dehydrogenase (DUF1295) [Source:UniProtKB/TrEMBL;Acc:O81042]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.