Factsheet for TraesCS2A01G038000.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

mitochondrion 1
extracellular 4
endoplasmic reticulum 3
vacuole 3
plasma membrane 5
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	secretory
iPSORT:	mitochondrion
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU2Hr1G093180.1	Barley	golgi, mitochondrion, plasma membrane	62.27	97.6
TraesCS2B01G051300.1	Wheat	plasma membrane	94.48	96.25
TraesCS2D01G037000.1	Wheat	plasma membrane	92.02	92.88
HORVU2Hr1G005680.1	Barley	endoplasmic reticulum, plasma membrane	92.94	87.07
EES10337	Sorghum	plasma membrane	79.14	80.62
Zm00001d024925_P001	Maize	plasma membrane	78.83	73.22
Os04t0105300-01	Rice	cytosol, nucleus, plastid	57.98	65.85
KRH06317	Soybean	plasma membrane	64.42	64.62
KRH47737	Soybean	plasma membrane	64.42	64.62
CDX80055	Canola	plasma membrane	63.5	63.89
Bra004499.1-P	Field mustard	plasma membrane	63.19	63.58
VIT_15s0048g02220.t01	Wine grape	plasma membrane	62.27	63.24
AT2G46890.1	Thale cress	plasma membrane	61.96	62.73
GSMUA_Achr1P00860_001	Banana	cytosol, endoplasmic reticulum, peroxisome	67.18	61.17
PGSC0003DMT400026984	Potato	plasma membrane	59.51	61.01
Solyc02g063390.2.1	Tomato	plasma membrane	59.51	61.01
KRG97275	Soybean	mitochondrion	59.2	60.88
PGSC0003DMT400051424	Potato	plasma membrane	56.44	57.14
Solyc01g005320.2.1	Tomato	plasma membrane	55.52	56.21
TraesCS4A01G270500.1	Wheat	extracellular, plasma membrane, vacuole	21.17	23.71

Protein Annotations

Gene3D:1.20.120.1630	InterPro:3-oxo-5_a-steroid_4-DH_C	MapMan:35.2	InterPro:DUF1295	GO:GO:0003674	GO:GO:0003824
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006629	GO:GO:0008150
GO:GO:0008152	GO:GO:0016020	GO:GO:0016021	GO:GO:0016627	InterPro:IPR001104	PFAM:PF06966
PFscan:PS50244	PANTHER:PTHR32251	PANTHER:PTHR32251:SF14	TMHMM:TMhelix	EnsemblPlantsGene:TraesCS2A01G038000	EnsemblPlants:TraesCS2A01G038000.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr2A:-:15962776..15964060

Molecular Weight (calculated)

37690.8 Da

IEP (calculated)

9.192

GRAVY (calculated)

0.126

Length

326 amino acids

Sequence
(BLAST)

001: MAGGYGGAGG NLKNMVIAFL VPLPSILFYL TFVRSQDGHS AGPVSSWCAA HPLLLANALF LLNVDVLFWL IGHLLSNNWL IDLYWTVIPV MLLHYFRAHP
101: AAVANTARSA AAVALTWVWS ARLTHNYFRR EGWQWGKQED WRFSEMRGQY GKTWWWMSFF AVYLSQQVFL IGICLPMYAI HSSDQPLGIW DLVATVVCIT
201: GVVIAYFADT QLHQFVTRNE KLKQLGEPTV PTLEDGLWGY SRHPNYFGEQ LWWWGVYLFA WNLGQRWMFI GALVNSMCLG YVTVLVERRM LKQEHRAEAY
301: RLYQKRTSVL IPWFRKSLPE PKEKET

Best Arabidopsis Sequence Match ( AT2G46890.1 )
(BLAST)

001: MNRNLRNAIV AFLAPLPSIV FYLTFLSNYS SSSDSELSSI QSWCLNHPLL LANLLFFLNV NVLFWVIGLL QSSHWMIDVY WTVIPVMLVH YFASHPLSQY
101: NKLRSMIVIT LTWIWSIRLT HNYFRRENWE WGAREDWRFN DLRKQYGKHW WWLSFFSVYV SQQIFLIGIC LPLYVIHSID EPLNIWDFIS SAICLTGIVM
201: AYFADTQLHE FVTGNQKLKE QGKPKIPNLD SGLWRYSRHP NYLGEQLWWW GLVIFAWNLG QGWTLIGALV NTLCLVYVTI LVERRMVKQQ YRAEAYRAYQ
301: KTTSVWIPWF KSHAAATKDK NT

Arabidopsis Description

3-oxo-5-alpha-steroid 4-dehydrogenase (DUF1295) [Source:UniProtKB/TrEMBL;Acc:O81042]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.