Factsheet for HORVU2Hr1G005680.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, endoplasmic reticulum

Predictor Summary:

mitochondrion 1
endoplasmic reticulum 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, plasma membrane
Any Predictor:	endoplasmic reticulum, mitochondrion, plasma membrane
iPSORT:	mitochondrion
MultiLoc:	endoplasmic reticulum
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU7Hr1G088900.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G46890.1	HORVU7Hr1G088900.1	AT4G19030.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU2Hr1G093180.1	Barley	golgi, mitochondrion, plasma membrane	59.77	100.0
TraesCS2A01G038000.1	Wheat	plasma membrane	87.07	92.94
TraesCS2B01G051300.1	Wheat	plasma membrane	84.77	92.19
TraesCS2D01G037000.1	Wheat	plasma membrane	85.06	91.64
EES10337	Sorghum	plasma membrane	74.14	80.62
Zm00001d024925_P001	Maize	plasma membrane	74.43	73.79
Os04t0105300-01	Rice	cytosol, nucleus, plastid	54.6	66.2
KRH06317	Soybean	plasma membrane	59.77	64.0
KRH47737	Soybean	plasma membrane	59.77	64.0
CDX80055	Canola	plasma membrane	58.91	63.27
Bra004499.1-P	Field mustard	plasma membrane	58.62	62.96
VIT_15s0048g02220.t01	Wine grape	plasma membrane	57.76	62.62
AT2G46890.1	Thale cress	plasma membrane	56.9	61.49
GSMUA_Achr1P00860_001	Banana	cytosol, endoplasmic reticulum, peroxisome	63.22	61.45
PGSC0003DMT400026984	Potato	plasma membrane	55.17	60.38
Solyc02g063390.2.1	Tomato	plasma membrane	55.17	60.38
KRG97275	Soybean	mitochondrion	54.6	59.94
PGSC0003DMT400051424	Potato	plasma membrane	52.3	56.52
Solyc01g005320.2.1	Tomato	plasma membrane	51.15	55.28
HORVU4Hr1G007090.1	Barley	extracellular, plasma membrane, vacuole	20.11	24.05

Protein Annotations

Gene3D:1.20.120.1630	InterPro:3-oxo-5_a-steroid_4-DH_C	MapMan:35.2	InterPro:DUF1295	GO:GO:0003674	GO:GO:0003824
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006629	GO:GO:0008150
GO:GO:0008152	GO:GO:0016020	GO:GO:0016021	GO:GO:0016627	GO:GO:0055114	EnsemblPlantsGene:HORVU2Hr1G005680
EnsemblPlants:HORVU2Hr1G005680.1	InterPro:IPR001104	PFAM:PF06966	PFscan:PS50244	PANTHER:PTHR32251	PANTHER:PTHR32251:SF14
TMHMM:TMhelix	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chrchr2H:+:12340249..12437409

Molecular Weight (calculated)

40205.8 Da

IEP (calculated)

9.212

GRAVY (calculated)

0.060

Length

348 amino acids

Sequence
(BLAST)

001: ATHTLSVLHS RSEHTPTRRR DARSAVTMAG GGGGGNLKNM VIAFLVPLPS ILFYLAFVRP QDDDPVSSWC AAHPLLLANA LFLLNVDVLF WLVGLLLGNN
101: WLIDLYWTVI PVMLLHYFRA HPAAVANAAR SAAAVALTWV WSARLTHNYF RREGWQWGKQ EDWRFSEMRG QYGKTWWWMS FFAVYLSQQV FLIGICLPMY
201: AIHSSDQPLG IWDLVATMVC IAGVVIAYFA DTQLHEFVTR NEKMKQLGEP TVPTLEDGLW GYSRHPNYFG EQLWWWGVYL FAWNLGQRWM FIGALVNSMC
301: LGYVTVLVER RMLKQEHRAE AYRLYQKRTS VLIPWFRKSI PEPKEKET

Best Arabidopsis Sequence Match ( AT2G46890.1 )
(BLAST)

001: MNRNLRNAIV AFLAPLPSIV FYLTFLSNYS SSSDSELSSI QSWCLNHPLL LANLLFFLNV NVLFWVIGLL QSSHWMIDVY WTVIPVMLVH YFASHPLSQY
101: NKLRSMIVIT LTWIWSIRLT HNYFRRENWE WGAREDWRFN DLRKQYGKHW WWLSFFSVYV SQQIFLIGIC LPLYVIHSID EPLNIWDFIS SAICLTGIVM
201: AYFADTQLHE FVTGNQKLKE QGKPKIPNLD SGLWRYSRHP NYLGEQLWWW GLVIFAWNLG QGWTLIGALV NTLCLVYVTI LVERRMVKQQ YRAEAYRAYQ
301: KTTSVWIPWF KSHAAATKDK NT

Arabidopsis Description

3-oxo-5-alpha-steroid 4-dehydrogenase (DUF1295) [Source:UniProtKB/TrEMBL;Acc:O81042]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.