Factsheet for GSMUA_Achr1P00860_001

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, cytosol, peroxisome

Predictor Summary:

plastid 1
mitochondrion 1
endoplasmic reticulum 2
golgi 2
extracellular 1
vacuole 1
plasma membrane 1
cytosol 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, endoplasmic reticulum, peroxisome
Any Predictor:	cytosol, mitochondrion, peroxisome, plastid, secretory
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	golgi
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr4P10230_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G46890.1	GSMUA_Achr4P10230_001	AT4G19030.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU2Hr1G093180.1	Barley	golgi, mitochondrion, plasma membrane	40.78	70.19
EES10337	Sorghum	plasma membrane	62.29	69.69
TraesCS2D01G037000.1	Wheat	plasma membrane	62.29	69.04
TraesCS2B01G051300.1	Wheat	plasma membrane	60.61	67.81
TraesCS2A01G038000.1	Wheat	plasma membrane	61.17	67.18
KRH06317	Soybean	plasma membrane	60.89	67.08
PGSC0003DMT400026984	Potato	plasma membrane	59.5	66.98
KRH47737	Soybean	plasma membrane	60.06	66.15
VIT_15s0048g02220.t01	Wine grape	plasma membrane	59.22	66.04
Solyc02g063390.2.1	Tomato	plasma membrane	58.38	65.72
CDX80055	Canola	plasma membrane	58.94	65.12
Bra004499.1-P	Field mustard	plasma membrane	58.66	64.81
AT2G46890.1	Thale cress	plasma membrane	58.1	64.6
KRG97275	Soybean	mitochondrion	56.98	64.35
HORVU2Hr1G005680.1	Barley	endoplasmic reticulum, plasma membrane	61.45	63.22
Zm00001d024925_P001	Maize	plasma membrane	61.45	62.68
Os04t0105300-01	Rice	cytosol, nucleus, plastid	47.21	58.88
PGSC0003DMT400051424	Potato	plasma membrane	50.28	55.9
Solyc01g005320.2.1	Tomato	plasma membrane	49.72	55.28
GSMUA_Achr7P11890_001	Banana	plasma membrane	20.95	23.29

Protein Annotations

Gene3D:1.20.120.1630	InterPro:3-oxo-5_a-steroid_4-DH_C	MapMan:35.2	InterPro:DUF1295	GO:GO:0003674	GO:GO:0003824
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006629	GO:GO:0008150
GO:GO:0008152	GO:GO:0016020	GO:GO:0016021	GO:GO:0016627	GO:GO:0055114	EnsemblPlantsGene:GSMUA_Achr1G00860_001
EnsemblPlants:GSMUA_Achr1P00860_001	EnsemblPlants:GSMUA_Achr1T00860_001	InterPro:IPR001104	UniProt:M0RVZ4	PFAM:PF06966	PFscan:PS50244
PANTHER:PTHR32251	PANTHER:PTHR32251:SF14	TMHMM:TMhelix	UniParc:UPI00029576E9	SEG:seg	:

Description

DUF1295 domain containing protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr1G00860_001]

Coordinates

chr1:-:649872..656884

Molecular Weight (calculated)

41965.4 Da

IEP (calculated)

9.698

GRAVY (calculated)

-0.068

Length

358 amino acids

Sequence
(BLAST)

001: MNCSSDQNRN ERLISSRTRS ATPGSIHPTP KEVAMGSFKN AAIAFLAPLP SVLFYLSFLH HYRHRSSPSP PPSDHLWGWC FHHPLLLANV LFFANVDVLF
101: WLIGLLLSNH WLIDLYWTVI PVMLVHYFAS HPLAKADAAR SAVVTVLTWV WSVRLTHNYF RRERWQWGAR EDWRFNEMRK EYGRPWWWIS FFAVYLSQQV
201: FLIGICLPMY AIHSSDKPWN IWDSLATVAC LSGIVIAYFA DTQLYEFVSE NETLSKHGAP SVPNLDTGIW RYSRHPNYFG EQLWWWSLFV YAWNVGQGWM
301: FIGPLVNSLC LAYVTVLVER RMLKKDHRAE AYREYQRRTS VWIPWFKRTS GVPKAKSS

Best Arabidopsis Sequence Match ( AT2G46890.1 )
(BLAST)

001: MNRNLRNAIV AFLAPLPSIV FYLTFLSNYS SSSDSELSSI QSWCLNHPLL LANLLFFLNV NVLFWVIGLL QSSHWMIDVY WTVIPVMLVH YFASHPLSQY
101: NKLRSMIVIT LTWIWSIRLT HNYFRRENWE WGAREDWRFN DLRKQYGKHW WWLSFFSVYV SQQIFLIGIC LPLYVIHSID EPLNIWDFIS SAICLTGIVM
201: AYFADTQLHE FVTGNQKLKE QGKPKIPNLD SGLWRYSRHP NYLGEQLWWW GLVIFAWNLG QGWTLIGALV NTLCLVYVTI LVERRMVKQQ YRAEAYRAYQ
301: KTTSVWIPWF KSHAAATKDK NT

Arabidopsis Description

3-oxo-5-alpha-steroid 4-dehydrogenase (DUF1295) [Source:UniProtKB/TrEMBL;Acc:O81042]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.