Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 2
- extracellular 5
- golgi 4
- plasma membrane 6
- endoplasmic reticulum 4
- vacuole 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc02g071920.2.1 | |
| Solyc03g005980.2.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G46890.1 | Solyc02g071920.2.1 | AT4G19030.1 | 21798944 |
| AT2G46890.1 | Solyc03g005980.2.1 | AT4G19030.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400051424 | Potato | plasma membrane | 94.72 | 94.72 |
| Solyc02g063390.2.1 | Tomato | plasma membrane | 63.66 | 64.47 |
| VIT_15s0048g02220.t01 | Wine grape | plasma membrane | 61.8 | 61.99 |
| HORVU2Hr1G093180.1 | Barley | golgi, mitochondrion, plasma membrane | 38.51 | 59.62 |
| AT2G46890.1 | Thale cress | plasma membrane | 58.07 | 58.07 |
| KRG97275 | Soybean | mitochondrion | 56.21 | 57.1 |
| KRH47737 | Soybean | plasma membrane | 57.45 | 56.92 |
| Bra004499.1-P | Field mustard | plasma membrane | 57.14 | 56.79 |
| KRH06317 | Soybean | plasma membrane | 57.14 | 56.62 |
| CDX80055 | Canola | plasma membrane | 56.83 | 56.48 |
| TraesCS2D01G037000.1 | Wheat | plasma membrane | 56.52 | 56.35 |
| EES10337 | Sorghum | plasma membrane | 55.9 | 56.25 |
| TraesCS2B01G051300.1 | Wheat | plasma membrane | 55.9 | 56.25 |
| TraesCS2A01G038000.1 | Wheat | plasma membrane | 56.21 | 55.52 |
| HORVU2Hr1G005680.1 | Barley | endoplasmic reticulum, plasma membrane | 55.28 | 51.15 |
| Zm00001d024925_P001 | Maize | plasma membrane | 55.59 | 51.0 |
| GSMUA_Achr1P00860_001 | Banana | cytosol, endoplasmic reticulum, peroxisome | 55.28 | 49.72 |
| Os04t0105300-01 | Rice | cytosol, nucleus, plastid | 40.37 | 45.3 |
| Solyc06g068970.2.1 | Tomato | nucleus | 16.15 | 18.12 |
| Solyc03g118830.2.1 | Tomato | plasma membrane | 16.77 | 17.76 |
Protein Annotations
| Gene3D:1.20.120.1630 | InterPro:3-oxo-5_a-steroid_4-DH_C | MapMan:35.2 | InterPro:DUF1295 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006629 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016627 | GO:GO:0055114 | InterPro:IPR001104 |
| UniProt:K4AS99 | PFAM:PF06966 | PFscan:PS50244 | PANTHER:PTHR32251 | PANTHER:PTHR32251:SF14 | EnsemblPlantsGene:Solyc01g005320.2 |
| EnsemblPlants:Solyc01g005320.2.1 | TMHMM:TMhelix | UniParc:UPI0002761AC2 | : | : | : |
Description
No Description!
Coordinates
chr1:-:226371..228592
Molecular Weight (calculated)
38609.5 Da
IEP (calculated)
9.111
GRAVY (calculated)
0.208
Length
322 amino acids
Sequence
(BLAST)
(BLAST)
001: MAALSNFKNG LIAFLATFPC ILFYLCFLHN IHNEDHNSLW NWCNNHPILL ANIMFFLNVN VLFWFIALLQ SNLHWMIGLY WMVIPVMLLH FYANLPMAQY
101: NQLRSWIVTI LTWIWSIRMI HSYFRRENWQ LGVKQDWRYT DMSNQYGKNW WWISFFAIYL SQQVLQMGIC LPLYIVHSVD KPLTFLDFVA ITICLCGITI
201: AFYADTELHN FIIKNKKLQQ LGQPMVPILD KGLWCYSRHP NYLGEQLWWW GLALFGWNLS QNWIFIGALI NSICLGYVTM LVEKKMVRQK YREDAYKLYQ
301: KNTFVWIPWF NFSTNGKDKK KD
101: NQLRSWIVTI LTWIWSIRMI HSYFRRENWQ LGVKQDWRYT DMSNQYGKNW WWISFFAIYL SQQVLQMGIC LPLYIVHSVD KPLTFLDFVA ITICLCGITI
201: AFYADTELHN FIIKNKKLQQ LGQPMVPILD KGLWCYSRHP NYLGEQLWWW GLALFGWNLS QNWIFIGALI NSICLGYVTM LVEKKMVRQK YREDAYKLYQ
301: KNTFVWIPWF NFSTNGKDKK KD
001: MNRNLRNAIV AFLAPLPSIV FYLTFLSNYS SSSDSELSSI QSWCLNHPLL LANLLFFLNV NVLFWVIGLL QSSHWMIDVY WTVIPVMLVH YFASHPLSQY
101: NKLRSMIVIT LTWIWSIRLT HNYFRRENWE WGAREDWRFN DLRKQYGKHW WWLSFFSVYV SQQIFLIGIC LPLYVIHSID EPLNIWDFIS SAICLTGIVM
201: AYFADTQLHE FVTGNQKLKE QGKPKIPNLD SGLWRYSRHP NYLGEQLWWW GLVIFAWNLG QGWTLIGALV NTLCLVYVTI LVERRMVKQQ YRAEAYRAYQ
301: KTTSVWIPWF KSHAAATKDK NT
101: NKLRSMIVIT LTWIWSIRLT HNYFRRENWE WGAREDWRFN DLRKQYGKHW WWLSFFSVYV SQQIFLIGIC LPLYVIHSID EPLNIWDFIS SAICLTGIVM
201: AYFADTQLHE FVTGNQKLKE QGKPKIPNLD SGLWRYSRHP NYLGEQLWWW GLVIFAWNLG QGWTLIGALV NTLCLVYVTI LVERRMVKQQ YRAEAYRAYQ
301: KTTSVWIPWF KSHAAATKDK NT
Arabidopsis Description
3-oxo-5-alpha-steroid 4-dehydrogenase (DUF1295) [Source:UniProtKB/TrEMBL;Acc:O81042]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.