Factsheet for TraesCS2B01G051300.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

extracellular 5
endoplasmic reticulum 4
vacuole 4
plasma membrane 6
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU2Hr1G093180.1	Barley	golgi, mitochondrion, plasma membrane	62.81	96.63
TraesCS2A01G038000.1	Wheat	plasma membrane	96.25	94.48
TraesCS2D01G037000.1	Wheat	plasma membrane	92.81	91.95
HORVU2Hr1G005680.1	Barley	endoplasmic reticulum, plasma membrane	92.19	84.77
EES10337	Sorghum	plasma membrane	81.25	81.25
Zm00001d024925_P001	Maize	plasma membrane	79.69	72.65
Os04t0105300-01	Rice	cytosol, nucleus, plastid	58.75	65.51
KRH06317	Soybean	plasma membrane	65.0	64.0
KRH47737	Soybean	plasma membrane	65.0	64.0
VIT_15s0048g02220.t01	Wine grape	plasma membrane	64.06	63.86
CDX80055	Canola	plasma membrane	64.06	63.27
Bra004499.1-P	Field mustard	plasma membrane	63.75	62.96
AT2G46890.1	Thale cress	plasma membrane	62.5	62.11
PGSC0003DMT400026984	Potato	plasma membrane	61.25	61.64
Solyc02g063390.2.1	Tomato	plasma membrane	61.25	61.64
KRG97275	Soybean	mitochondrion	60.94	61.51
GSMUA_Achr1P00860_001	Banana	cytosol, endoplasmic reticulum, peroxisome	67.81	60.61
PGSC0003DMT400051424	Potato	plasma membrane	57.19	56.83
Solyc01g005320.2.1	Tomato	plasma membrane	56.25	55.9
TraesCS4B01G043600.1	Wheat	extracellular, plasma membrane, vacuole	21.56	23.71

Protein Annotations

Gene3D:1.20.120.1630	InterPro:3-oxo-5_a-steroid_4-DH_C	MapMan:35.2	InterPro:DUF1295	GO:GO:0003674	GO:GO:0003824
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006629	GO:GO:0008150
GO:GO:0008152	GO:GO:0016020	GO:GO:0016021	GO:GO:0016627	InterPro:IPR001104	PFAM:PF06966
PFscan:PS50244	PANTHER:PTHR32251	PANTHER:PTHR32251:SF14	TMHMM:TMhelix	EnsemblPlantsGene:TraesCS2B01G051300	EnsemblPlants:TraesCS2B01G051300.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr2B:-:25072123..25073382

Molecular Weight (calculated)

37306.5 Da

IEP (calculated)

9.380

GRAVY (calculated)

0.140

Length

320 amino acids

Sequence
(BLAST)

001: MAGGNLKNMA IAFLVPLPSI LFYLAFVRPQ DGHIAGPVSS WCTAHPLLLA NALFLLNVDV LFWLIGHLLS NNWLIDLYWT VIPVMLLHYF RAHPAAVANT
101: VRSALALALT WAWSARLTHN YFRREGWQWG KREDWRFSEM RGQYGKTWWW MSFFAVYLSQ QVFLIGICLP MYAIHSSDQP LGIWDLVATV VCITGVVIAY
201: FADTQLHQFV TRNEKLKQLG EPTVPTLEDG LWGYSRHPNY FGEQLWWWGV YLFAWNLGQR WMFVGALVNS MCLGYVTVLV ERRMLKQEHR AEAYRLYQKR
301: TSVLIPWFRK SLPEPKEKET

Best Arabidopsis Sequence Match ( AT2G46890.1 )
(BLAST)

001: MNRNLRNAIV AFLAPLPSIV FYLTFLSNYS SSSDSELSSI QSWCLNHPLL LANLLFFLNV NVLFWVIGLL QSSHWMIDVY WTVIPVMLVH YFASHPLSQY
101: NKLRSMIVIT LTWIWSIRLT HNYFRRENWE WGAREDWRFN DLRKQYGKHW WWLSFFSVYV SQQIFLIGIC LPLYVIHSID EPLNIWDFIS SAICLTGIVM
201: AYFADTQLHE FVTGNQKLKE QGKPKIPNLD SGLWRYSRHP NYLGEQLWWW GLVIFAWNLG QGWTLIGALV NTLCLVYVTI LVERRMVKQQ YRAEAYRAYQ
301: KTTSVWIPWF KSHAAATKDK NT

Arabidopsis Description

3-oxo-5-alpha-steroid 4-dehydrogenase (DUF1295) [Source:UniProtKB/TrEMBL;Acc:O81042]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.