Factsheet for PGSC0003DMT400074062

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
extracellular 3
endoplasmic reticulum 3
vacuole 4
plasma membrane 6
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	plasma membrane
Plant-mPloc:	plasma membrane
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g068970.2.1	Tomato	nucleus	96.17	96.17
Os03t0708400-01	Rice	plasma membrane	77.7	76.63
KXG37747	Sorghum	endoplasmic reticulum, plasma membrane, vacuole	77.7	76.11
VIT_17s0000g02520.t01	Wine grape	plasma membrane	81.18	75.9
Zm00001d013456_P001	Maize	endoplasmic reticulum, plasma membrane, vacuole	75.96	74.91
PGSC0003DMT400014451	Potato	plasma membrane	83.28	74.69
CDX96490	Canola	endoplasmic reticulum, plasma membrane, vacuole	62.72	74.07
Bra015977.1-P	Field mustard	plasma membrane	74.91	73.88
KRH41812	Soybean	endoplasmic reticulum, plasma membrane, vacuole	74.56	73.54
TraesCS4B01G043600.1	Wheat	extracellular, plasma membrane, vacuole	73.87	72.85
HORVU4Hr1G007090.1	Barley	extracellular, plasma membrane, vacuole	73.52	72.51
TraesCS4D01G041100.1	Wheat	extracellular, plasma membrane, vacuole	73.52	72.51
TraesCS4A01G270500.1	Wheat	extracellular, plasma membrane, vacuole	73.17	72.16
Bra008106.1-P	Field mustard	endoplasmic reticulum, plasma membrane, vacuole	73.52	72.01
CDY19194	Canola	plasma membrane	73.17	71.92
Bra025926.1-P	Field mustard	plasma membrane	73.17	71.92
CDY26182	Canola	plasma membrane	72.82	71.58
CDX72998	Canola	plasma membrane	72.47	71.48
CDX82058	Canola	endoplasmic reticulum, plasma membrane, vacuole	72.47	70.99
CDY47744	Canola	endoplasmic reticulum, plasma membrane, vacuole	72.13	70.89
AT1G73650.3	Thale cress	plasma membrane	74.56	70.86
KRH60513	Soybean	plasma membrane	75.26	70.59
AT1G18180.1	Thale cress	plasma membrane	73.52	69.18
GSMUA_Achr7P11890_001	Banana	plasma membrane	76.31	68.01
PGSC0003DMT400014452	Potato	cytosol, golgi, plasma membrane	55.4	62.85
PGSC0003DMT400026984	Potato	plasma membrane	22.3	20.13
PGSC0003DMT400051424	Potato	plasma membrane	18.12	16.15

Protein Annotations

Gene3D:1.20.120.1630	InterPro:3-oxo-5_a-steroid_4-DH_C	MapMan:35.2	InterPro:DUF1295	GO:GO:0003674	GO:GO:0003824
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006629	GO:GO:0008150
GO:GO:0008152	GO:GO:0016020	GO:GO:0016021	GO:GO:0016627	GO:GO:0055114	InterPro:IPR001104
UniProt:M1CT30	PFAM:PF06966	EnsemblPlantsGene:PGSC0003DMG402028784	PGSC:PGSC0003DMG402028784	EnsemblPlants:PGSC0003DMT400074062	PFscan:PS50244
PANTHER:PTHR32251	PANTHER:PTHR32251:SF15	TMHMM:TMhelix	UniParc:UPI000295BF65	SEG:seg	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG402028784]

Coordinates

chr6:-:50679742..50682903

Molecular Weight (calculated)

32912.7 Da

IEP (calculated)

7.587

GRAVY (calculated)

0.539

Length

287 amino acids

Sequence
(BLAST)

001: MGTVIDSHFL GLTAIVTVVY QLIFFIITAL LKFDKVTDFA GGTNFIVLAL LTLILKGSWN FRQVVLSVFV VIWGLRLGIF LLMRILQWGE DRRFDDKRDN
101: LGKLAIFWLF QAIWVWTVSL PVTVVNASDH QPSLQTVDII GWIMWSIGIL VEITADQQKL TFKNSPENRG KWCNVGLWKY SRHPNYFGEM FLWWGIFVAS
201: TPVLEGAEWL VVLGPVFLML LLLFVSGIPL LEESADKKYG NVAEYIIYKD TTSPLILLPP GLYGMLPSWY KTIFLFEFPL YSRNLSQ

Best Arabidopsis Sequence Match ( AT1G73650.2 )
(BLAST)

001: MGTVLDSHFL ALTAIVTVIY QFIFFVITAL FKFDQVTDFA GSTNFVILAV LTLVLKASWH FRQIVLTLLV VVWGLRLGIF LLMRILQWGE DRRFDEQRGN
101: IVRLIIFWTL QAVWVWTVSL PLTLVNASDG GGSLKPADVI GWTMWVFGFL IEAAADQQKL SFKNSPENRG KWCDVGVWKY SRHPNYFGEM LLWWGIFVAA
201: SPVLEGAEYL VIFGPLFLTL LLLFVSGIPL LEASADKKHG NSGAYRSYKK TTSPLILFPR GVYGNLPGWF KTVFLFEFPF YSRNLPQEVA V

Arabidopsis Description

Protein of unknown function (DUF1295) [Source:TAIR;Acc:AT1G73650]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.