CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, vacuole, plasma membrane

Predictor Summary:

nucleus 1
extracellular 4
endoplasmic reticulum 5
vacuole 5
plasma membrane 5
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, plasma membrane, vacuole
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra008106.1-P	Field mustard	endoplasmic reticulum, plasma membrane, vacuole	98.63	98.29
CDX82058	Canola	endoplasmic reticulum, plasma membrane, vacuole	94.86	94.54
CDX72998	Canola	plasma membrane	89.73	90.03
CDX96490	Canola	endoplasmic reticulum, plasma membrane, vacuole	72.6	87.24
AT1G73650.3	Thale cress	plasma membrane	89.73	86.75
CDY19194	Canola	plasma membrane	79.45	79.45
CDY26182	Canola	plasma membrane	78.42	78.42
VIT_17s0000g02520.t01	Wine grape	plasma membrane	78.42	74.59
Solyc06g068970.2.1	Tomato	nucleus	70.89	72.13
PGSC0003DMT400074062	Potato	plasma membrane	70.89	72.13
Os03t0708400-01	Rice	plasma membrane	70.89	71.13
TraesCS4B01G043600.1	Wheat	extracellular, plasma membrane, vacuole	70.55	70.79
KXG37747	Sorghum	endoplasmic reticulum, plasma membrane, vacuole	70.89	70.65
HORVU4Hr1G007090.1	Barley	extracellular, plasma membrane, vacuole	70.21	70.45
Zm00001d013456_P001	Maize	endoplasmic reticulum, plasma membrane, vacuole	70.21	70.45
TraesCS4D01G041100.1	Wheat	extracellular, plasma membrane, vacuole	69.86	70.1
KRH41812	Soybean	endoplasmic reticulum, plasma membrane, vacuole	69.52	69.76
TraesCS4A01G270500.1	Wheat	extracellular, plasma membrane, vacuole	69.52	69.76
Solyc03g118830.2.1	Tomato	plasma membrane	70.21	67.43
GSMUA_Achr7P11890_001	Banana	plasma membrane	73.29	66.46
KRH60513	Soybean	plasma membrane	69.52	66.34
PGSC0003DMT400014451	Potato	plasma membrane	70.21	64.06
PGSC0003DMT400014452	Potato	cytosol, golgi, plasma membrane	45.55	52.57
CDX80055	Canola	plasma membrane	23.63	21.3

Protein Annotations

Gene3D:1.20.120.1630	InterPro:3-oxo-5_a-steroid_4-DH_C	MapMan:35.2	GO:A0A078IEF2	UniProt:A0A078IEF2	EnsemblPlants:CDY47744
ProteinID:CDY47744	ProteinID:CDY47744.1	InterPro:DUF1295	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006629	GO:GO:0008150	GO:GO:0008152
GO:GO:0016020	GO:GO:0016021	GO:GO:0016627	GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00088022001	InterPro:IPR001104
PFAM:PF06966	PFscan:PS50244	PANTHER:PTHR32251	PANTHER:PTHR32251:SF15	TMHMM:TMhelix	UniParc:UPI0004EE3C62

Description

BnaA02g16510DBnaA02g16510D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IEF2]

Coordinates

chrLK032732:+:110274..112100

Molecular Weight (calculated)

32909.6 Da

IEP (calculated)

8.994

GRAVY (calculated)

0.534

Length

292 amino acids

Sequence
(BLAST)

001: MGTVLDSHFL ALTAIVTVVY QFIFFVITAL FKIDQVTDFA GSTNFVILAL LTLILKSTWH FRQIVLTLLV VVWGLRLGIF LLMRILQWGE DRRFDEMRGN
101: LVKLIVFWTL QAVWVWTVSL PLTVVNAASD GGGSLKPADV IGWTMWVFGF LIEAATDQQK LSFKNSPENR GKWCDVGVWK YSRHPNYFGE ILLWWGVVAA
201: SPVLEGAEYL VIFGPLFLTL LLIFVSGIPL LEASSDKKHG NLGAYRFYKK TTSPLIPLPR GVYGNLPGWC KAVFLLELPF YSRNLPEEAA VS

Best Arabidopsis Sequence Match ( AT1G73650.2 )
(BLAST)

001: MGTVLDSHFL ALTAIVTVIY QFIFFVITAL FKFDQVTDFA GSTNFVILAV LTLVLKASWH FRQIVLTLLV VVWGLRLGIF LLMRILQWGE DRRFDEQRGN
101: IVRLIIFWTL QAVWVWTVSL PLTLVNASDG GGSLKPADVI GWTMWVFGFL IEAAADQQKL SFKNSPENRG KWCDVGVWKY SRHPNYFGEM LLWWGIFVAA
201: SPVLEGAEYL VIFGPLFLTL LLLFVSGIPL LEASADKKHG NSGAYRSYKK TTSPLILFPR GVYGNLPGWF KTVFLFEFPF YSRNLPQEVA V

Arabidopsis Description

Protein of unknown function (DUF1295) [Source:TAIR;Acc:AT1G73650]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.