Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 1
- extracellular 3
- endoplasmic reticulum 4
- vacuole 3
- plasma membrane 5
- golgi 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY19194 | Canola | plasma membrane | 85.25 | 89.04 |
| CDY26182 | Canola | plasma membrane | 84.92 | 88.7 |
| Bra025926.1-P | Field mustard | plasma membrane | 84.59 | 88.36 |
| AT1G73650.3 | Thale cress | plasma membrane | 77.7 | 78.48 |
| VIT_17s0000g02520.t01 | Wine grape | plasma membrane | 74.43 | 73.94 |
| PGSC0003DMT400074062 | Potato | plasma membrane | 69.18 | 73.52 |
| Solyc06g068970.2.1 | Tomato | nucleus | 68.52 | 72.82 |
| KRH41812 | Soybean | endoplasmic reticulum, plasma membrane, vacuole | 67.21 | 70.45 |
| KXG37747 | Sorghum | endoplasmic reticulum, plasma membrane, vacuole | 67.54 | 70.31 |
| Os03t0708400-01 | Rice | plasma membrane | 66.89 | 70.1 |
| Zm00001d013456_P001 | Maize | endoplasmic reticulum, plasma membrane, vacuole | 66.23 | 69.42 |
| TraesCS4B01G043600.1 | Wheat | extracellular, plasma membrane, vacuole | 66.23 | 69.42 |
| TraesCS4A01G270500.1 | Wheat | extracellular, plasma membrane, vacuole | 65.9 | 69.07 |
| Solyc03g118830.2.1 | Tomato | plasma membrane | 68.52 | 68.75 |
| TraesCS4D01G041100.1 | Wheat | extracellular, plasma membrane, vacuole | 65.57 | 68.73 |
| HORVU4Hr1G007090.1 | Barley | extracellular, plasma membrane, vacuole | 64.59 | 67.7 |
| KRH60513 | Soybean | plasma membrane | 67.87 | 67.65 |
| GSMUA_Achr7P11890_001 | Banana | plasma membrane | 69.18 | 65.53 |
| PGSC0003DMT400014451 | Potato | plasma membrane | 67.87 | 64.69 |
| PGSC0003DMT400014452 | Potato | cytosol, golgi, plasma membrane | 43.93 | 52.96 |
| AT2G46890.1 | Thale cress | plasma membrane | 22.62 | 21.43 |
Protein Annotations
| Gene3D:1.20.120.1630 | InterPro:3-oxo-5_a-steroid_4-DH_C | MapMan:35.2 | EntrezGene:838397 | ProteinID:AEE29684.1 | ProteinID:ANM57842.1 |
| ArrayExpress:AT1G18180 | EnsemblPlantsGene:AT1G18180 | RefSeq:AT1G18180 | TAIR:AT1G18180 | RefSeq:AT1G18180-TAIR-G | EnsemblPlants:AT1G18180.1 |
| TAIR:AT1G18180.1 | Unigene:At.51660 | InterPro:DUF1295 | UniProt:F4IAN4 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005886 | GO:GO:0006629 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016627 | GO:GO:0055114 |
| InterPro:IPR001104 | RefSeq:NP_001320322.1 | RefSeq:NP_173256.2 | PFAM:PF06966 | PO:PO:0000005 | PO:PO:0000037 |
| PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007098 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009052 | PO:PO:0020038 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | PFscan:PS50244 |
| PANTHER:PTHR32251 | PANTHER:PTHR32251:SF15 | TMHMM:TMhelix | UniParc:UPI000150578B | SEG:seg | : |
Description
Protein of unknown function (DUF1295) [Source:TAIR;Acc:AT1G18180]
Coordinates
chr1:+:6255785..6257900
Molecular Weight (calculated)
35201.4 Da
IEP (calculated)
9.819
GRAVY (calculated)
0.337
Length
305 amino acids
Sequence
(BLAST)
(BLAST)
001: MVKVIDSHYL AITAIVTVGY QFIFFVITAL FKFDQVTDFA GSTNFVILAV LTLLLKGTWH YRQIVLTVLV VVWGLRLGLF LLMRILQWGE DRRFDDMREN
101: IGKLVVFWIF QAVWVWTVSL PVTFVNASNG GRLFQPADVI GWTMWVAGFL IEATADQQKL SFKKCPENKG KWCDVGVWKY SRHPNYFGEM LLWWGLYVAS
201: LPVLKGLEYL VIIGPVFLTL LLLFVSGIPL LEESADKKYG NLGAYRHYKK TTSPLILLPR GVYGYLPIWC KSVFLFEFPL YSRNLPQETT AWDRRNSKKS
301: QRSID
101: IGKLVVFWIF QAVWVWTVSL PVTFVNASNG GRLFQPADVI GWTMWVAGFL IEATADQQKL SFKKCPENKG KWCDVGVWKY SRHPNYFGEM LLWWGLYVAS
201: LPVLKGLEYL VIIGPVFLTL LLLFVSGIPL LEESADKKYG NLGAYRHYKK TTSPLILLPR GVYGYLPIWC KSVFLFEFPL YSRNLPQETT AWDRRNSKKS
301: QRSID
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.