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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: peroxisome

Predictor Summary:
  • cytosol 1
  • peroxisome 2
  • plasma membrane 3
  • plastid 2
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:peroxisome
Any Predictor:cytosol, peroxisome, plastid, secretory
BaCelLo:cytosol
MultiLoc:peroxisome
Plant-mPloc:plasma membrane, plastid
PProwler:secretory
TargetP:plastid
WoLF PSORT:plasma membrane
YLoc:peroxisome
PPI

Inferred distinct locusB in Crop

locusBlocations
EER89811
EER91363
EER92238
EER93147
EER93195
EER99823
EES00126
EES00703
EES01977
EES03240
EES03339
EES04366
EES04687
EES10337
EES11733
EES17764
EES18791
EES19652
EES19841
KXG24074
KXG31516
KXG33320
KXG37644
OQU77594
OQU81657
OQU84758
OQU86697
OQU87114
OQU88745

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G11220.1 EES00703 AT1G09330.1 21798944
AT4G11220.1 EES17764 AT1G09330.1 21798944
AT4G11220.1 EER93147 AT3G59500.1 21798944
AT4G11220.1 EES04687 AT3G59500.1 21798944
AT4G11220.1 KXG24074 AT3G59500.1 21798944
AT5G41600.1 EES00126 AT1G55190.1 21798944
AT5G41600.1 OQU77594 AT1G55190.1 21798944
AT5G41600.1 OQU86697 AT1G77350.1 21798944
AT5G41600.1 EES04366 AT2G03120.1 21798944
AT5G41600.1 KXG37644 AT2G03120.1 21798944
AT5G41600.1 OQU87114 AT2G03120.1 21798944
AT5G41600.1 OQU81657 AT2G39960.1 21798944
AT5G41600.1 EES10337 AT2G46890.1 21798944
AT5G41600.1 EES03240 AT3G02420.1 21798944
AT5G41600.1 EES03339 AT3G02420.1 21798944
AT5G41600.1 EES18791 AT3G02420.1 21798944
AT5G41600.1 EER92238 AT3G07950.1 21798944
AT5G41600.1 EER99823 AT3G07950.1 21798944
AT5G41600.1 EES11733 AT3G07950.1 21798944
AT5G41600.1 EES01977 AT3G27080.1 21798944
AT5G41600.1 EER93195 AT3G46060.1 21798944
AT5G41600.1 EES19652 AT3G46060.1 21798944
AT5G41600.1 OQU88745 AT3G46060.1 21798944
AT5G41600.1 EER93147 AT3G59500.1 21798944
AT5G41600.1 EES04687 AT3G59500.1 21798944
AT5G41600.1 KXG24074 AT3G59500.1 21798944
AT5G41600.1 EER89811 AT5G41600.1 21798944
AT5G41600.1 EES19841 AT5G41600.1 21798944
AT5G41600.1 KXG31516 AT5G41600.1 21798944
AT5G41600.1 KXG33320 AT5G41600.1 21798944
AT5G41600.1 OQU84758 AT5G41600.1 21798944
AT5G41600.1 EER91363 AT5G53560.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d037453_P001 Maize cytosol, peroxisome, plasma membrane 90.62 88.89
Os06t0503400-01 Rice plasma membrane 84.77 81.89
TraesCS7A01G341800.1 Wheat cytosol, peroxisome, plasma membrane, plastid 80.08 78.85
TraesCS7B01G241100.1 Wheat cytosol, peroxisome, plasma membrane, plastid 80.08 78.85
TraesCS7D01G337800.1 Wheat cytosol, peroxisome, plasma membrane, plastid 78.52 77.31
HORVU7Hr1G081290.4 Barley plastid 67.19 74.46
HORVU7Hr1G075700.2 Barley mitochondrion 80.86 69.0
OQU84758 Sorghum cytosol, peroxisome, plasma membrane 61.72 68.1
KRH41254 Soybean cytosol, nucleus, plasma membrane 53.12 53.54
KRH59988 Soybean mitochondrion 51.95 52.36
PGSC0003DMT400074360 Potato cytosol, nucleus, plasma membrane 51.56 52.17
CDY13240 Canola cytosol, peroxisome, plasma membrane 32.81 52.17
VIT_15s0046g01760.t01 Wine grape cytosol, peroxisome, plasma membrane 51.95 52.16
GSMUA_Achr10P... Banana cytosol, endoplasmic reticulum, plasma membrane 51.17 51.98
VIT_02s0025g00640.t01 Wine grape cytosol, nucleus, plasma membrane 51.17 51.98
Solyc03g007740.2.1 Tomato nucleus 51.56 51.76
Solyc01g095200.2.1 Tomato plastid 53.12 51.71
PGSC0003DMT400000230 Potato cytosol, nucleus, plasma membrane 53.52 51.7
Solyc06g036430.2.1 Tomato cytosol, nucleus, plasma membrane 50.78 51.38
EES19841 Sorghum cytosol, nucleus, plasma membrane 51.17 51.37
PGSC0003DMT400051387 Potato cytosol, nucleus, plasma membrane 51.17 51.37
CDY25557 Canola cytosol, endoplasmic reticulum, nucleus 50.0 51.0
PGSC0003DMT400049928 Potato cytosol, nucleus, plasma membrane 50.78 50.98
KRG99174 Soybean endoplasmic reticulum, plasma membrane 17.19 50.57
CDY34396 Canola cytosol, endoplasmic reticulum, nucleus 49.22 50.2
Solyc08g081730.2.1 Tomato endoplasmic reticulum, plastid 52.73 50.0
CDY38194 Canola cytosol, nucleus, plasma membrane 48.83 50.0
PGSC0003DMT400032086 Potato cytosol, nucleus, plasma membrane 52.34 49.63
KXG33320 Sorghum cytosol, nucleus, plasma membrane 50.0 49.61
Solyc10g011870.2.1 Tomato cytosol, nucleus, plasma membrane 50.78 49.43
Bra027678.1-P Field mustard cytosol, endoplasmic reticulum, nucleus 48.44 49.4
Bra027757.1-P Field mustard cytosol, endoplasmic reticulum, peroxisome 48.05 49.2
KRH40357 Soybean endoplasmic reticulum 49.22 49.03
CDY08353 Canola cytosol, endoplasmic reticulum, nucleus 47.66 48.8
KRH06560 Soybean endoplasmic reticulum 48.44 48.44
CDX90792 Canola cytosol, peroxisome, plasma membrane 50.0 47.94
KRH00872 Soybean endoplasmic reticulum 48.44 47.88
GSMUA_Achr5P06850_001 Banana cytosol, nucleus, plasma membrane 46.48 47.6
Bra000739.1-P Field mustard cytosol 49.61 47.57
CDX79993 Canola cytosol, peroxisome, plasma membrane 46.09 47.01
Bra004562.1-P Field mustard cytosol, peroxisome, plasma membrane 46.09 47.01
CDY57657 Canola cytosol, nucleus, plasma membrane 50.39 46.91
AT4G11220.1 Thale cress nucleus 49.22 46.49
Bra013717.1-P Field mustard nucleus 50.0 46.38
Bra019285.1-P Field mustard cytosol 48.44 46.27
CDY42012 Canola cytosol, peroxisome, plasma membrane 45.31 46.22
Bra010539.1-P Field mustard cytosol 48.44 46.1
CDY52012 Canola cytosol, peroxisome, plasma membrane 45.7 46.06
CDY10954 Canola cytosol 48.44 45.93
VIT_16s0050g01790.t01 Wine grape cytosol, nucleus, plasma membrane 45.31 45.67
CDY44123 Canola cytosol, nucleus, plasma membrane 49.22 45.65
CDY24806 Canola cytosol 48.83 45.62
AT5G41600.1 Thale cress cytosol, nucleus, plasma membrane 45.7 45.53
AT2G46170.1 Thale cress cytosol, nucleus, plasma membrane 45.31 45.49
Bra003455.1-P Field mustard cytosol, peroxisome, plasma membrane 44.92 45.28
CDY53913 Canola cytosol, peroxisome, plasma membrane 44.92 45.28
AT4G23630.2 Thale cress nucleus 48.44 45.09
CDY41666 Canola cytosol 48.44 44.93
AT3G61560.1 Thale cress cytosol, nucleus, plasma membrane 44.14 44.66
AT1G64090.2 Thale cress cytosol, endoplasmic reticulum, nucleus 47.27 44.65
KRH35223 Soybean cytosol, nucleus, plasma membrane 43.36 44.4
KXG31516 Sorghum cytosol, nucleus, plasma membrane 49.22 44.37
KRH48008 Soybean cytosol, peroxisome, plasma membrane 50.39 41.08
CDY05135 Canola mitochondrion 48.83 39.94
KXG21632 Sorghum nucleus, peroxisome, plasma membrane 37.89 39.11
KXG33168 Sorghum golgi, peroxisome, plasma membrane 32.81 38.89
EER90788 Sorghum cytosol, nucleus, plasma membrane 37.11 38.46
EES11624 Sorghum plasma membrane 29.3 37.88
VIT_02s0025g00590.t01 Wine grape mitochondrion 8.59 36.67
CDY48510 Canola cytosol 34.77 36.63
CDY07184 Canola cytosol, peroxisome, plasma membrane 34.77 36.63
Bra037369.1-P Field mustard cytosol 34.77 36.63
EES19907 Sorghum cytosol, peroxisome, plasma membrane 31.64 35.84
AT4G01230.2 Thale cress cytosol 33.98 35.66
Bra035242.1-P Field mustard cytosol 27.73 35.5
CDY62522 Canola cytosol 10.55 33.75
CDX86802 Canola cytosol, nucleus, peroxisome 32.03 33.47
EES02516 Sorghum peroxisome, plastid 28.12 33.03
EER92307 Sorghum peroxisome 29.3 32.89
KRG91601 Soybean mitochondrion 42.97 32.35
VIT_07s0031g02730.t01 Wine grape golgi, mitochondrion, nucleus, plasma membrane 22.66 32.22
CDX89122 Canola extracellular, mitochondrion 17.97 30.07
KXG34376 Sorghum plasma membrane 35.94 29.3
EES03891 Sorghum golgi, peroxisome, plasma membrane 23.44 28.3
OQU78555 Sorghum extracellular 24.22 28.05
Protein Annotations
MapMan:13.7.2.1EntrezGene:8085376UniProt:C5Z372EnsemblPlants:EER89811ProteinID:EER89811ProteinID:EER89811.1
GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005783GO:GO:0005789
GO:GO:0016020GO:GO:0016021InterPro:IPR003388PFAM:PF02453PFscan:PS50845PANTHER:PTHR10994
PANTHER:PTHR10994:SF73InterPro:ReticulonEnsemblPlantsGene:SORBI_3010G147600unigene:Sbi.4751TMHMM:TMhelixUniParc:UPI00001AB922
RefSeq:XP_002438444.1SEG:seg::::
Description
hypothetical protein
Coordinates
chr10:-:42282829..42286943
Molecular Weight (calculated)
27851.9 Da
IEP (calculated)
7.323
GRAVY (calculated)
0.177
Length
256 amino acids
Sequence
(BLAST)
001: MADPAEENVA SPPPTPAAPA EGVSDPPLQP AADGASTEKV SAPAPEVRSR GFRLLGEDNS VHKALGGGKT ADVLLWKDKK TSAVVIGGAT VIWVLFEVLD
101: YHLLTLISHA LIGVLAILFL WSKATTFIRK SPPDIPVVQI PEDLVVNVSR ALCNDINRAL HLFHEIAMGH DLKKFLFVIV GLWVNSVFGS SCDFLTLIYI
201: AVLLLHTVPI LYDKYQDKVD HFAGRAHTEA LKQYEVLDAK VLSKIPRGPV KSKKQN
Best Arabidopsis Sequence Match ( AT4G11220.1 )
(BLAST)
001: MADEHKHEES SPNLDPAVEV VERESLMEKL SEKIHHKGDS SSSSSSDDEN EKKSSSSSPK SLKSKVYRLF GRERPVHKVL GGGKPADIFM WKDKKMSGGV
101: FGGATVAWVL FELMEYHLLT LLCHVMIVAL AVLFLWSNAT MFIHKSPPKI PEVHIPEEPL LQLASGLRIE INRGISSLRE IASGRDIKKF LSAIAGLWVL
201: SILGGCYSFL TLAYIALVLL FTVPLFYDKY EDKVDSYGEK AMAELKKQYA VLDAKVFSKI PRGPLKDKKK D
Arabidopsis Description
RTNLB2Reticulon-like protein B2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUT9]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.