CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
peroxisome 1
plasma membrane 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	mitochondrion, nucleus, peroxisome, plasma membrane
BaCelLo:	nucleus
MultiLoc:	peroxisome
Plant-mPloc:	plasma membrane
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
EES05123

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G07950.1	EES05123	AT1G27300.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d024933_P003	Maize	plasma membrane	98.12	98.12
Zm00001d004543_P001	Maize	extracellular	96.55	95.95
Os04t0103300-01	Rice	peroxisome	87.46	87.74
TraesCS2A01G040100.2	Wheat	golgi, unclear	87.46	87.46
TraesCS2B01G053000.1	Wheat	plasma membrane	86.52	87.07
TraesCS2D01G038700.1	Wheat	plasma membrane	86.52	86.52
HORVU2Hr1G006030.4	Barley	golgi, plasma membrane	81.19	77.78
Solyc04g049180.2.1	Tomato	extracellular, golgi, vacuole	36.99	48.76
EER99823	Sorghum	plasma membrane	45.14	45.71
KRH08383	Soybean	plasma membrane	43.57	45.57
KRH70041	Soybean	plasma membrane	43.57	45.42
VIT_13s0019g04120.t01	Wine grape	plasma membrane, plastid	44.2	45.34
CDY22146	Canola	plasma membrane	42.01	45.12
CDY28006	Canola	plasma membrane	41.69	44.78
CDY35975	Canola	plasma membrane	41.69	44.78
Bra029689.1-P	Field mustard	plasma membrane	42.32	44.41
AT3G07950.1	Thale cress	plasma membrane	42.32	44.41
Bra040042.1-P	Field mustard	plasma membrane	42.01	43.93
KRH34890	Soybean	plasma membrane	44.51	43.69
EER92238	Sorghum	plastid	42.63	42.37
KRH75962	Soybean	endoplasmic reticulum, vacuole	17.87	39.86
KRG91881	Soybean	extracellular, golgi, plasma membrane	23.51	36.95

Protein Annotations

MapMan:19.4.2.6	EntrezGene:8056948	UniProt:C5YB94	InterPro:DUF1751_Mem_euk	EnsemblPlants:EES11733	ProteinID:EES11733
ProteinID:EES11733.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004252	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005794	GO:GO:0006810	GO:GO:0006890	GO:GO:0008150
GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	PFAM:PF08551	PANTHER:PTHR13377	PANTHER:PTHR13377:SF5
SMART:SM01160	EnsemblPlantsGene:SORBI_3006G002700	SUPFAM:SSF144091	unigene:Sbi.14335	TMHMM:TMhelix	UniParc:UPI0001A8711E
RefSeq:XP_002447405.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr6:-:460537..464786

Molecular Weight (calculated)

34838.7 Da

IEP (calculated)

7.242

GRAVY (calculated)

0.294

Length

319 amino acids

Sequence
(BLAST)

001: MMESQPLQDP TATAPAPGSA EPAGAPPAVT PGKEFTRTCK GLVVVLIGGY VLLQLLPSSL NYLAIIPSKT IPYVWTVFTA GYIEQVLPGA IGSSLGLLFC
101: GKDIEPAWGR KEFLKFIILI NSICGILAFC FAIGLYYVTG KESFLVTPLS GFHGCLAGFL VALKQLLPNL ELPMCFFWKI KAKWMPFFVV CFSSIMAFIV
201: PDSINFLPTL VSGMYVSWLY LRYFQRNPLT GLKGDPSDDF SFPSLFPAAM RPVTDPVANL FDRMLCARSR PSEVALPISD PAKASRRRER GERVLEERLA
301: ADNAGDTEAT PHGHGTAED

Best Arabidopsis Sequence Match ( AT3G07950.1 )
(BLAST)

001: MSSPGTSMFT NFTKLCKGLA LVLVVGHLVV QFIPATVPYL ALIPARTIPF AWNLITSGYF ELSVYGVVFS TVSLLFMGKF LEPVWGSTEF LKFIFVVNFL
101: TYLCVFVTAI ALYYITRLEV YLYMPFAGFH GVLAGLLVGI KQIIPDQEIL LLKIKAKWLP SIMLILSIAS SFFTLDSAAY LPTLIFGTYM GWLYLRYLQR
201: RPETKLRGDP SDDFAFSTFF PELLRPVIDP IALIFHRMLC GRSNATSEDH DYSTSGAPLP GSDSAEASRR RERGARALEE RLGTERLVPA RNKDELQSDG
301: LDNV

Arabidopsis Description

RBL19Rhomboid-like protein 19 [Source:UniProtKB/Swiss-Prot;Acc:Q8LF05]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.