Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 1
- extracellular 3
- endoplasmic reticulum 3
- vacuole 3
- plasma membrane 5
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra029689.1-P | Field mustard | plasma membrane | 93.09 | 93.09 |
| CDY35975 | Canola | plasma membrane | 90.79 | 92.93 |
| CDY22146 | Canola | plasma membrane | 90.13 | 92.26 |
| CDY28006 | Canola | plasma membrane | 90.13 | 92.26 |
| Bra040042.1-P | Field mustard | plasma membrane | 91.12 | 90.82 |
| KRH70041 | Soybean | plasma membrane | 71.05 | 70.59 |
| KRH08383 | Soybean | plasma membrane | 70.72 | 70.49 |
| VIT_13s0019g04120.t01 | Wine grape | plasma membrane, plastid | 71.05 | 69.45 |
| Solyc04g049180.2.1 | Tomato | extracellular, golgi, vacuole | 52.63 | 66.12 |
| KRH75962 | Soybean | endoplasmic reticulum, vacuole | 29.93 | 63.64 |
| KRH34890 | Soybean | plasma membrane | 66.78 | 62.46 |
| GSMUA_Achr4P20820_001 | Banana | endoplasmic reticulum, plasma membrane, plastid | 61.51 | 58.8 |
| GSMUA_Achr7P01900_001 | Banana | endoplasmic reticulum, mitochondrion, plasma membrane, plastid | 59.87 | 57.23 |
| EER99823 | Sorghum | plasma membrane | 58.55 | 56.51 |
| Os03t0358200-00 | Rice | golgi | 57.89 | 56.05 |
| Os07t0655400-01 | Rice | plastid | 57.89 | 55.7 |
| TraesCS2D01G138200.1 | Wheat | golgi | 56.58 | 54.78 |
| TraesCS2B01G159600.1 | Wheat | plasma membrane, plastid | 56.58 | 54.78 |
| TraesCS2A01G135700.1 | Wheat | plasma membrane, plastid | 56.58 | 54.78 |
| EER92238 | Sorghum | plastid | 57.24 | 54.21 |
| KRG91881 | Soybean | extracellular, golgi, plasma membrane | 36.18 | 54.19 |
| Zm00001d029226_P001 | Maize | plasma membrane | 56.25 | 50.74 |
| HORVU0Hr1G002680.2 | Barley | golgi | 45.39 | 49.29 |
| Zm00001d047446_P002 | Maize | plasma membrane, plastid | 55.59 | 48.42 |
| Zm00001d007067_P003 | Maize | plasma membrane | 57.89 | 46.93 |
| Os04t0103300-01 | Rice | peroxisome | 46.05 | 44.03 |
| TraesCS2D01G038700.1 | Wheat | plasma membrane | 44.74 | 42.63 |
| TraesCS2A01G040100.2 | Wheat | golgi, unclear | 44.41 | 42.32 |
| EES11733 | Sorghum | plasma membrane | 44.41 | 42.32 |
| TraesCS2B01G053000.1 | Wheat | plasma membrane | 44.08 | 42.27 |
| Zm00001d004543_P001 | Maize | extracellular | 44.08 | 41.74 |
| Zm00001d024933_P003 | Maize | plasma membrane | 43.75 | 41.69 |
| HORVU2Hr1G006030.4 | Barley | golgi, plasma membrane | 45.39 | 41.44 |
Protein Annotations
| Gene3D:1.20.1540.10 | MapMan:19.4.2.6 | EntrezGene:819986 | UniProt:A0A178VIV6 | ProteinID:AAF21205.1 | ProteinID:AEE74624.1 |
| EMBL:AK221782 | ArrayExpress:AT3G07950 | EnsemblPlantsGene:AT3G07950 | RefSeq:AT3G07950 | TAIR:AT3G07950 | RefSeq:AT3G07950-TAIR-G |
| EnsemblPlants:AT3G07950.1 | TAIR:AT3G07950.1 | EMBL:AY085112 | Unigene:At.27668 | EMBL:BT002055 | EMBL:BT008814 |
| InterPro:DUF1751_Mem_euk | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005794 |
| GO:GO:0006810 | GO:GO:0006890 | GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016021 | InterPro:IPR035952 |
| RefSeq:NP_566326.1 | ProteinID:OAP06249.1 | PFAM:PF08551 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 |
| PO:PO:0025281 | PANTHER:PTHR13377 | PANTHER:PTHR13377:SF6 | UniProt:Q8LF05 | InterPro:Rhomboid-like_sf | SMART:SM01160 |
| SUPFAM:SSF144091 | TMHMM:TMhelix | UniParc:UPI00000AC054 | SEG:seg | : | : |
Description
RBL19Rhomboid-like protein 19 [Source:UniProtKB/Swiss-Prot;Acc:Q8LF05]
Coordinates
chr3:+:2531773..2534545
Molecular Weight (calculated)
34085.8 Da
IEP (calculated)
8.038
GRAVY (calculated)
0.391
Length
304 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSPGTSMFT NFTKLCKGLA LVLVVGHLVV QFIPATVPYL ALIPARTIPF AWNLITSGYF ELSVYGVVFS TVSLLFMGKF LEPVWGSTEF LKFIFVVNFL
101: TYLCVFVTAI ALYYITRLEV YLYMPFAGFH GVLAGLLVGI KQIIPDQEIL LLKIKAKWLP SIMLILSIAS SFFTLDSAAY LPTLIFGTYM GWLYLRYLQR
201: RPETKLRGDP SDDFAFSTFF PELLRPVIDP IALIFHRMLC GRSNATSEDH DYSTSGAPLP GSDSAEASRR RERGARALEE RLGTERLVPA RNKDELQSDG
301: LDNV
101: TYLCVFVTAI ALYYITRLEV YLYMPFAGFH GVLAGLLVGI KQIIPDQEIL LLKIKAKWLP SIMLILSIAS SFFTLDSAAY LPTLIFGTYM GWLYLRYLQR
201: RPETKLRGDP SDDFAFSTFF PELLRPVIDP IALIFHRMLC GRSNATSEDH DYSTSGAPLP GSDSAEASRR RERGARALEE RLGTERLVPA RNKDELQSDG
301: LDNV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.