Factsheet for Os03t0358200-00

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

plastid 1
extracellular 4
golgi 6
plasma membrane 6
endoplasmic reticulum 4
vacuole 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	plastid, secretory
BaCelLo:	plastid
iPSORT:	secretory
MultiLoc:	golgi
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	golgi

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0509600-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G07950.1	Os02t0509600-01	AT1G27300.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER92238	Sorghum	plastid	77.07	75.39
Os07t0655400-01	Rice	plastid	73.25	72.78
Zm00001d029226_P001	Maize	plasma membrane	75.48	70.33
Zm00001d047446_P002	Maize	plasma membrane, plastid	76.11	68.48
GSMUA_Achr4P20820_001	Banana	endoplasmic reticulum, plasma membrane, plastid	66.24	65.41
GSMUA_Achr7P01900_001	Banana	endoplasmic reticulum, mitochondrion, plasma membrane, plastid	65.29	64.47
VIT_13s0019g04120.t01	Wine grape	plasma membrane, plastid	62.42	63.02
Solyc04g049180.2.1	Tomato	extracellular, golgi, vacuole	48.09	62.4
CDY22146	Canola	plasma membrane	56.05	59.26
CDY28006	Canola	plasma membrane	56.05	59.26
CDY35975	Canola	plasma membrane	55.41	58.59
KRH08383	Soybean	plasma membrane	56.37	58.03
Bra040042.1-P	Field mustard	plasma membrane	56.37	58.03
AT3G07950.1	Thale cress	plasma membrane	56.05	57.89
Bra029689.1-P	Field mustard	plasma membrane	55.73	57.57
KRH70041	Soybean	plasma membrane	56.05	57.52
KRH34890	Soybean	plasma membrane	55.73	53.85
KRH75962	Soybean	endoplasmic reticulum, vacuole	22.61	49.65
KRG91881	Soybean	extracellular, golgi, plasma membrane	31.21	48.28
Os04t0103300-01	Rice	peroxisome	45.22	44.65

Protein Annotations

MapMan:19.4.2.6	UniProt:A0A0P0VXK3	ProteinID:BAS84262.1	InterPro:DUF1751_Mem_euk	GO:GO:0005575	GO:GO:0006810
GO:GO:0006890	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	EnsemblPlantsGene:Os03g0358200	EnsemblPlants:Os03t0358200-00
PFAM:PF08551	PANTHER:PTHR13377	PANTHER:PTHR13377:SF6	SMART:SM01160	SUPFAM:SSF144091	TMHMM:TMhelix
UniParc:UPI000393C070	SEG:seg	:	:	:	:

Description

Rhomboid 8, RHOMBOID 8Similar to transmembrane protein 115. (Os03t0358200-00)

Coordinates

chr3:-:13883733..13887462

Molecular Weight (calculated)

35380.2 Da

IEP (calculated)

8.127

GRAVY (calculated)

0.290

Length

314 amino acids

Sequence
(BLAST)

001: MQVGKSGFTK LCKGLAVVLF LGHIVIRLFP SAVTYLALIP SRTIPFAWNL VTSGYIEQTI PGVIVSIVGL LVLGKVLEPL WGAKELLKFI FLVNLSTSAC
101: VFVTAIILYY ITQQEIYLYT PLSGFYGVLS GFLVGIKQIL PDQEITLFLL NIKAKWIPSL VAFISVSLSF FMKDSVSYIP IILFGIYLSW IYLRYFQKRL
201: EAGLKGDPSD EFSFSSFFPE FLRPVLDPIA SVFHTLVCGR SERSEANDQT LDGLLPGSYS IEANRRRERG QRALEQRLAE KLAAVRSSEA TLHHHHHHHH
301: HHHQQDEDDA SDKV

Best Arabidopsis Sequence Match ( AT3G07950.1 )
(BLAST)

001: MSSPGTSMFT NFTKLCKGLA LVLVVGHLVV QFIPATVPYL ALIPARTIPF AWNLITSGYF ELSVYGVVFS TVSLLFMGKF LEPVWGSTEF LKFIFVVNFL
101: TYLCVFVTAI ALYYITRLEV YLYMPFAGFH GVLAGLLVGI KQIIPDQEIL LLKIKAKWLP SIMLILSIAS SFFTLDSAAY LPTLIFGTYM GWLYLRYLQR
201: RPETKLRGDP SDDFAFSTFF PELLRPVIDP IALIFHRMLC GRSNATSEDH DYSTSGAPLP GSDSAEASRR RERGARALEE RLGTERLVPA RNKDELQSDG
301: LDNV

Arabidopsis Description

RBL19Rhomboid-like protein 19 [Source:UniProtKB/Swiss-Prot;Acc:Q8LF05]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.