CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

extracellular 5
golgi 6
plasma membrane 7
endoplasmic reticulum 5
vacuole 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	golgi
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX78905
CDX84933
CDX98596
CDX99411
CDY01565
CDY03907
CDY15722
CDY27605

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G07950.1	CDX84933	AT1G27300.1	21798944
AT3G07950.1	CDY03907	AT1G27300.1	21798944
AT3G07950.1	CDY15722	AT1G27300.1	21798944
AT3G07950.1	CDY27605	AT1G27300.1	21798944
AT3G07950.1	CDX78905	AT4G19030.1	21798944
AT3G07950.1	CDX98596	AT4G19030.1	21798944
AT3G07950.1	CDX99411	AT4G19030.1	21798944
AT3G07950.1	CDY01565	AT4G19030.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY35975	Canola	plasma membrane	97.98	97.98
CDY22146	Canola	plasma membrane	95.29	95.29
AT3G07950.1	Thale cress	plasma membrane	92.26	90.13
KRH08383	Soybean	plasma membrane	70.37	68.52
VIT_13s0019g04120.t01	Wine grape	plasma membrane, plastid	71.72	68.49
KRH70041	Soybean	plasma membrane	70.37	68.3
Solyc04g049180.2.1	Tomato	extracellular, golgi, vacuole	54.21	66.53
KRH75962	Soybean	endoplasmic reticulum, vacuole	30.64	63.64
KRH34890	Soybean	plasma membrane	68.69	62.77
GSMUA_Achr4P20820_001	Banana	endoplasmic reticulum, plasma membrane, plastid	61.95	57.86
GSMUA_Achr7P01900_001	Banana	endoplasmic reticulum, mitochondrion, plasma membrane, plastid	61.62	57.55
Os07t0655400-01	Rice	plastid	60.61	56.96
EER99823	Sorghum	plasma membrane	59.6	56.19
Os03t0358200-00	Rice	golgi	59.26	56.05
EER92238	Sorghum	plastid	60.27	55.76
KRG91881	Soybean	extracellular, golgi, plasma membrane	37.37	54.68
TraesCS2B01G159600.1	Wheat	plasma membrane, plastid	57.58	54.46
TraesCS2D01G138200.1	Wheat	golgi	57.24	54.14
TraesCS2A01G135700.1	Wheat	plasma membrane, plastid	57.24	54.14
Zm00001d029226_P001	Maize	plasma membrane	59.26	52.23
HORVU0Hr1G002680.2	Barley	golgi	47.47	50.36
Zm00001d047446_P002	Maize	plasma membrane, plastid	58.92	50.14
Zm00001d007067_P003	Maize	plasma membrane	58.92	46.67
Os04t0103300-01	Rice	peroxisome	46.8	43.71
TraesCS2D01G038700.1	Wheat	plasma membrane	45.12	42.01
TraesCS2B01G053000.1	Wheat	plasma membrane	44.78	41.96
TraesCS2A01G040100.2	Wheat	golgi, unclear	44.78	41.69
EES11733	Sorghum	plasma membrane	44.78	41.69
Zm00001d004543_P001	Maize	extracellular	44.44	41.12
Zm00001d024933_P003	Maize	plasma membrane	44.11	41.07
HORVU2Hr1G006030.4	Barley	golgi, plasma membrane	45.12	40.24

Protein Annotations

Gene3D:1.20.1540.10	MapMan:19.4.2.6	GO:A0A078GRG6	UniProt:A0A078GRG6	EnsemblPlants:CDY28006	ProteinID:CDY28006
ProteinID:CDY28006.1	InterPro:DUF1751_Mem_euk	GO:GO:0005575	GO:GO:0006810	GO:GO:0006890	GO:GO:0008150
GO:GO:0016020	GO:GO:0016021	EnsemblPlantsGene:GSBRNA2T00038932001	InterPro:IPR035952	PFAM:PF08551	PANTHER:PTHR13377
PANTHER:PTHR13377:SF6	InterPro:Rhomboid-like_sf	SMART:SM01160	SUPFAM:SSF144091	TMHMM:TMhelix	UniParc:UPI0004EEED6F
SEG:seg	:	:	:	:	:

Description

BnaC05g44080DBnaC05g44080D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GRG6]

Coordinates

chrLK032213:-:175653..177888

Molecular Weight (calculated)

33356.0 Da

IEP (calculated)

8.970

GRAVY (calculated)

0.394

Length

297 amino acids

Sequence
(BLAST)

001: MFTNFTKLCK GLALVLVVGH ALVHFVPATV TYLALIPART IPFGWNLITS GYFELSVYGV VFSTVSLLFM GKFLEPVWGS KEFLKFIFVV NFLTYLCVFV
101: TAIALYYITR LEIYLYMPFA GFHGVLAGLL VGIKQIIPDQ EVLLVKIKAK WLPSIMLVLS VASSFFTLNS AAYLPTLIFG TYMGWLYLRY LQRRPETKLR
201: GDPSDDFAFS TFFPEFLRPV IEPIASIFHR MLCGRSNATS EDHGYTTSGA PLPGSDSAEA SRRRERGARA LEERLATERL VPPKNKDELQ SDALDSV

Best Arabidopsis Sequence Match ( AT3G07950.1 )
(BLAST)

001: MSSPGTSMFT NFTKLCKGLA LVLVVGHLVV QFIPATVPYL ALIPARTIPF AWNLITSGYF ELSVYGVVFS TVSLLFMGKF LEPVWGSTEF LKFIFVVNFL
101: TYLCVFVTAI ALYYITRLEV YLYMPFAGFH GVLAGLLVGI KQIIPDQEIL LLKIKAKWLP SIMLILSIAS SFFTLDSAAY LPTLIFGTYM GWLYLRYLQR
201: RPETKLRGDP SDDFAFSTFF PELLRPVIDP IALIFHRMLC GRSNATSEDH DYSTSGAPLP GSDSAEASRR RERGARALEE RLGTERLVPA RNKDELQSDG
301: LDNV

Arabidopsis Description

RBL19Rhomboid-like protein 19 [Source:UniProtKB/Swiss-Prot;Acc:Q8LF05]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.