Factsheet for TraesCS2A01G040100.2

Subcellular Localization

min:

: max

Winner_takes_all: golgi, unclear

Predictor Summary:

peroxisome 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 3
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, unclear
Any Predictor:	peroxisome, plasma membrane
MultiLoc:	peroxisome
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

golgi: 25769308
unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G346700.1
TraesCS2B01G365000.1
TraesCS2D01G345400.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G07950.1	TraesCS2A01G346700.1	AT1G27300.1	21798944
AT3G07950.1	TraesCS2B01G365000.1	AT1G27300.1	21798944
AT3G07950.1	TraesCS2D01G345400.1	AT1G27300.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G038700.1	Wheat	plasma membrane	97.81	97.81
TraesCS2B01G053000.1	Wheat	plasma membrane	96.24	96.85
Os04t0103300-01	Rice	peroxisome	91.22	91.51
EES11733	Sorghum	plasma membrane	87.46	87.46
Zm00001d004543_P001	Maize	extracellular	87.77	87.23
Zm00001d024933_P003	Maize	plasma membrane	87.15	87.15
HORVU2Hr1G006030.4	Barley	golgi, plasma membrane	89.66	85.89
Solyc04g049180.2.1	Tomato	extracellular, golgi, vacuole	36.36	47.93
TraesCS2A01G135700.1	Wheat	plasma membrane, plastid	46.71	47.45
KRH08383	Soybean	plasma membrane	44.2	46.23
KRH70041	Soybean	plasma membrane	44.2	46.08
VIT_13s0019g04120.t01	Wine grape	plasma membrane, plastid	44.2	45.34
CDY22146	Canola	plasma membrane	42.01	45.12
CDY28006	Canola	plasma membrane	41.69	44.78
CDY35975	Canola	plasma membrane	41.69	44.78
KRH34890	Soybean	plasma membrane	45.45	44.62
Bra040042.1-P	Field mustard	plasma membrane	42.63	44.59
AT3G07950.1	Thale cress	plasma membrane	42.32	44.41
Bra029689.1-P	Field mustard	plasma membrane	42.01	44.08
KRH75962	Soybean	endoplasmic reticulum, vacuole	17.24	38.46
KRG91881	Soybean	extracellular, golgi, plasma membrane	23.82	37.44

Protein Annotations

EnsemblPlants:TraesCS2A01G040100.2	EnsemblPlantsGene:TraesCS2A01G040100	GO:GO:0005575	GO:GO:0006810	GO:GO:0006890	GO:GO:0008150
GO:GO:0016020	GO:GO:0016021	InterPro:DUF1751_Mem_euk	PANTHER:PTHR13377	PANTHER:PTHR13377:SF5	PFAM:PF08551
SEG:seg	SMART:SM01160	SUPFAM:SSF144091	TMHMM:TMhelix	MapMan:19.4.2.6	:

Description

No Description!

Coordinates

chr2A:+:16550300..16552609

Molecular Weight (calculated)

34854.8 Da

IEP (calculated)

6.506

GRAVY (calculated)

0.322

Length

319 amino acids

Sequence
(BLAST)

001: MMESQPLQAP TAEPHGAGAA DDQPGAGAPP AVVPGKEFTR TCKGLVVVLI GGYVLLQLLP SSLNYLAIIP AKTIPFVWTV FTAGYIEQVL PGAIGSSLGL
101: LFCGKDIEPV WGRKEFLKFI ILINSICGIL AFCIAVALYY VTGKESFLVT PLSGFHGALA GFLVGLKQLL PNLELPMCFF WKIKAKWMPF FVMCFSTIMA
201: FIVPDSINFL PTLLSGMYVS WLYLRYFQKN PLTGLKGDPS DDFSFPSLFP DAMRPVTDPV ANLFDRMLCA RSKPSEIALP VTDPTKASRR RERGERVLEE
301: RMAADHAADA EAPAHSAED

Best Arabidopsis Sequence Match ( AT3G07950.1 )
(BLAST)

001: MSSPGTSMFT NFTKLCKGLA LVLVVGHLVV QFIPATVPYL ALIPARTIPF AWNLITSGYF ELSVYGVVFS TVSLLFMGKF LEPVWGSTEF LKFIFVVNFL
101: TYLCVFVTAI ALYYITRLEV YLYMPFAGFH GVLAGLLVGI KQIIPDQEIL LLKIKAKWLP SIMLILSIAS SFFTLDSAAY LPTLIFGTYM GWLYLRYLQR
201: RPETKLRGDP SDDFAFSTFF PELLRPVIDP IALIFHRMLC GRSNATSEDH DYSTSGAPLP GSDSAEASRR RERGARALEE RLGTERLVPA RNKDELQSDG
301: LDNV

Arabidopsis Description

RBL19Rhomboid-like protein 19 [Source:UniProtKB/Swiss-Prot;Acc:Q8LF05]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.