CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, golgi, extracellular

Predictor Summary:

plastid 2
cytosol 1
extracellular 5
endoplasmic reticulum 4
vacuole 4
plasma membrane 5
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, golgi, plasma membrane
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	plastid
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	golgi
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG97393
KRH11076
KRH21197
KRH31520
KRH42923
KRH42926
KRH45251
KRH59035
KRH59036
KRH76090

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G07950.1	KRG97393	AT1G27300.1	21798944
AT3G07950.1	KRH31520	AT1G27300.1	21798944
AT3G07950.1	KRH76090	AT1G27300.1	21798944
AT3G07950.1	KRH11076	AT4G19030.1	21798944
AT3G07950.1	KRH21197	AT4G19030.1	21798944
AT3G07950.1	KRH42923	AT4G19030.1	21798944
AT3G07950.1	KRH42926	AT4G19030.1	21798944
AT3G07950.1	KRH45251	AT4G19030.1	21798944
AT3G07950.1	KRH59035	AT4G19030.1	21798944
AT3G07950.1	KRH59036	AT4G19030.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g049180.2.1	Tomato	extracellular, golgi, vacuole	55.17	46.28
KRH34890	Soybean	plasma membrane	70.44	44.0
KRH75962	Soybean	endoplasmic reticulum, vacuole	29.06	41.26
KRH08383	Soybean	plasma membrane	61.58	40.98
KRH70041	Soybean	plasma membrane	61.58	40.85
VIT_13s0019g04120.t01	Wine grape	plasma membrane, plastid	58.62	38.26
CDY22146	Canola	plasma membrane	55.17	37.71
CDY28006	Canola	plasma membrane	54.68	37.37
CDY35975	Canola	plasma membrane	54.19	37.04
Bra040042.1-P	Field mustard	plasma membrane	55.17	36.72
Bra029689.1-P	Field mustard	plasma membrane	54.68	36.51
AT3G07950.1	Thale cress	plasma membrane	54.19	36.18
HORVU0Hr1G002680.2	Barley	golgi	46.8	33.93
Os07t0655400-01	Rice	plastid	51.72	33.23
EER99823	Sorghum	plasma membrane	50.25	32.38
GSMUA_Achr7P01900_001	Banana	endoplasmic reticulum, mitochondrion, plasma membrane, plastid	49.75	31.76
GSMUA_Achr4P20820_001	Banana	endoplasmic reticulum, plasma membrane, plastid	49.26	31.45
Os03t0358200-00	Rice	golgi	48.28	31.21
TraesCS2B01G159600.1	Wheat	plasma membrane, plastid	47.78	30.89
TraesCS2A01G135700.1	Wheat	plasma membrane, plastid	47.29	30.57
TraesCS2D01G138200.1	Wheat	golgi	47.29	30.57
EER92238	Sorghum	plastid	46.8	29.59
Zm00001d029226_P001	Maize	plasma membrane	44.83	27.0
Zm00001d007067_P003	Maize	plasma membrane	49.26	26.67
Zm00001d047446_P002	Maize	plasma membrane, plastid	44.83	26.07
Os04t0103300-01	Rice	peroxisome	38.42	24.53
TraesCS2D01G038700.1	Wheat	plasma membrane	37.44	23.82
TraesCS2A01G040100.2	Wheat	golgi, unclear	37.44	23.82
TraesCS2B01G053000.1	Wheat	plasma membrane	36.95	23.66
EES11733	Sorghum	plasma membrane	36.95	23.51
Zm00001d024933_P003	Maize	plasma membrane	36.45	23.2
Zm00001d004543_P001	Maize	extracellular	36.45	23.05
HORVU2Hr1G006030.4	Barley	golgi, plasma membrane	37.44	22.82

Protein Annotations

MapMan:19.4.2.6	EMBL:ACUP02012712	InterPro:DUF1751_Mem_euk	EnsemblPlantsGene:GLYMA_20G179000	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005794	GO:GO:0006810	GO:GO:0006890	GO:GO:0008150
GO:GO:0016020	GO:GO:0016021	UniProt:K7N464	EnsemblPlants:KRG91881	ProteinID:KRG91881	ProteinID:KRG91881.1
PFAM:PF08551	PANTHER:PTHR13377	PANTHER:PTHR13377:SF6	SMART:SM01160	SUPFAM:SSF144091	TMHMM:TMhelix
UniParc:UPI000294CB65	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr20:-:41627009..41628645

Molecular Weight (calculated)

23266.2 Da

IEP (calculated)

8.972

GRAVY (calculated)

0.008

Length

203 amino acids

Sequence
(BLAST)

001: MLNNLSMGYL LVSTIGLLFI GKLLEPVWGP REFLKFIFLV NFLTSLCIFI TFIAFYYITR QESYLYMPLS GFHGVIFWLL GWHQANYSRS RASFPQDKSE
101: DTGRGNPKQN IRVTQVRILH SLLFFPEFLR PVIDPIASIF HRMLFGRDAS DDAQGYTLRG EPLPGSDPIE ASRRREIGAR ALEKRLAIAR SAEELQTDAT
201: ENV

Best Arabidopsis Sequence Match ( AT3G07950.1 )
(BLAST)

001: MSSPGTSMFT NFTKLCKGLA LVLVVGHLVV QFIPATVPYL ALIPARTIPF AWNLITSGYF ELSVYGVVFS TVSLLFMGKF LEPVWGSTEF LKFIFVVNFL
101: TYLCVFVTAI ALYYITRLEV YLYMPFAGFH GVLAGLLVGI KQIIPDQEIL LLKIKAKWLP SIMLILSIAS SFFTLDSAAY LPTLIFGTYM GWLYLRYLQR
201: RPETKLRGDP SDDFAFSTFF PELLRPVIDP IALIFHRMLC GRSNATSEDH DYSTSGAPLP GSDSAEASRR RERGARALEE RLGTERLVPA RNKDELQSDG
301: LDNV

Arabidopsis Description

RBL19Rhomboid-like protein 19 [Source:UniProtKB/Swiss-Prot;Acc:Q8LF05]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.