Factsheet for GSMUA_Achr4P20820_001

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, plastid, plasma membrane

Predictor Summary:

plastid 3
endoplasmic reticulum 2
plasma membrane 3
extracellular 1
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, plasma membrane, plastid
Any Predictor:	plastid, secretory
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr4P10230_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G07950.1	GSMUA_Achr4P10230_001	AT4G19030.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P01900_001	Banana	endoplasmic reticulum, mitochondrion, plasma membrane, plastid	85.85	85.85
EER99823	Sorghum	plasma membrane	71.38	72.06
Os07t0655400-01	Rice	plastid	69.18	69.62
TraesCS2B01G159600.1	Wheat	plasma membrane, plastid	68.24	69.11
TraesCS2D01G138200.1	Wheat	golgi	67.92	68.79
TraesCS2A01G135700.1	Wheat	plasma membrane, plastid	67.92	68.79
Solyc04g049180.2.1	Tomato	extracellular, golgi, vacuole	51.57	67.77
EER92238	Sorghum	plastid	67.61	66.98
Os03t0358200-00	Rice	golgi	65.41	66.24
VIT_13s0019g04120.t01	Wine grape	plasma membrane, plastid	64.15	65.59
CDY22146	Canola	plasma membrane	59.75	63.97
KRH08383	Soybean	plasma membrane	61.32	63.93
KRH70041	Soybean	plasma membrane	61.01	63.4
Bra040042.1-P	Field mustard	plasma membrane	60.38	62.95
HORVU0Hr1G002680.2	Barley	golgi	54.72	62.14
CDY35975	Canola	plasma membrane	57.86	61.95
CDY28006	Canola	plasma membrane	57.86	61.95
AT3G07950.1	Thale cress	plasma membrane	58.8	61.51
Bra029689.1-P	Field mustard	plasma membrane	58.49	61.18
Zm00001d029226_P001	Maize	plasma membrane	64.47	60.83
Zm00001d007067_P003	Maize	plasma membrane	71.38	60.53
Zm00001d047446_P002	Maize	plasma membrane, plastid	66.04	60.17
KRH34890	Soybean	plasma membrane	60.06	58.77
KRH75962	Soybean	endoplasmic reticulum, vacuole	24.53	54.55
KRG91881	Soybean	extracellular, golgi, plasma membrane	31.45	49.26

Protein Annotations

EnsemblPlants:GSMUA_Achr4P20820_001	EnsemblPlants:GSMUA_Achr4T20820_001	EnsemblPlantsGene:GSMUA_Achr4G20820_001	GO:GO:0005575	GO:GO:0006810	GO:GO:0006890
GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	InterPro:DUF1751_Mem_euk	PANTHER:PTHR13377	PANTHER:PTHR13377:SF6
PFAM:PF08551	SEG:seg	SMART:SM01160	SUPFAM:SSF144091	TMHMM:TMhelix	UniParc:UPI0002953079
UniProt:M0SQP5	MapMan:19.4.2.6	:	:	:	:

Description

Putative Transmembrane protein 115 [Source:GMGC_GENE;Acc:GSMUA_Achr4G20820_001]

Coordinates

chr4:+:21351149..21369461

Molecular Weight (calculated)

35123.8 Da

IEP (calculated)

9.238

GRAVY (calculated)

0.369

Length

318 amino acids

Sequence
(BLAST)

001: MLSSSSPPQP LQTGSSSFYT GFTRLCKGLA VILVLGHVLL QIFPSALPYV ALIPSSTIPF AWNLITAGYI EQSLIGVAIS TIGLLLFGKS LEPLWGSKEF
101: LKFIIVVNLF TSVCVFVTAI ALYYITRQES YLYTPFSGFH GVLSGFLVGI KQILPDQELS LFVLKIKAKW MPTLVTLISI ATSFFITDSV SYLPTLLFGI
201: YMSWIYLRYF QKRPETSLKG DPSDDFSFSS FFPEFLRPIL DPITSLFHWV FCGRRSGSSA ELRGRSLDAS PLPGSDSIEA ARRRERGARA LEQRLAAEKL
301: SAVGKVEGTS HQSAAENV

Best Arabidopsis Sequence Match ( AT3G07950.1 )
(BLAST)

001: MSSPGTSMFT NFTKLCKGLA LVLVVGHLVV QFIPATVPYL ALIPARTIPF AWNLITSGYF ELSVYGVVFS TVSLLFMGKF LEPVWGSTEF LKFIFVVNFL
101: TYLCVFVTAI ALYYITRLEV YLYMPFAGFH GVLAGLLVGI KQIIPDQEIL LLKIKAKWLP SIMLILSIAS SFFTLDSAAY LPTLIFGTYM GWLYLRYLQR
201: RPETKLRGDP SDDFAFSTFF PELLRPVIDP IALIFHRMLC GRSNATSEDH DYSTSGAPLP GSDSAEASRR RERGARALEE RLGTERLVPA RNKDELQSDG
301: LDNV

Arabidopsis Description

RBL19Rhomboid-like protein 19 [Source:UniProtKB/Swiss-Prot;Acc:Q8LF05]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.