Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- endoplasmic reticulum 2
- plasma membrane 3
- extracellular 1
- vacuole 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| plastid:
27992503
|
msms PMID:
27992503
doi
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os02t0509600-01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G07950.1 | Os02t0509600-01 | AT1G27300.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER99823 | Sorghum | plasma membrane | 85.76 | 86.03 |
| TraesCS2B01G159600.1 | Wheat | plasma membrane, plastid | 84.49 | 85.03 |
| TraesCS2D01G138200.1 | Wheat | golgi | 84.18 | 84.71 |
| TraesCS2A01G135700.1 | Wheat | plasma membrane, plastid | 84.18 | 84.71 |
| HORVU0Hr1G002680.2 | Barley | golgi | 65.19 | 73.57 |
| Os03t0358200-00 | Rice | golgi | 72.78 | 73.25 |
| Zm00001d007067_P003 | Maize | plasma membrane | 82.28 | 69.33 |
| GSMUA_Achr4P20820_001 | Banana | endoplasmic reticulum, plasma membrane, plastid | 69.62 | 69.18 |
| GSMUA_Achr7P01900_001 | Banana | endoplasmic reticulum, mitochondrion, plasma membrane, plastid | 68.67 | 68.24 |
| Solyc04g049180.2.1 | Tomato | extracellular, golgi, vacuole | 48.73 | 63.64 |
| VIT_13s0019g04120.t01 | Wine grape | plasma membrane, plastid | 61.39 | 62.38 |
| KRH08383 | Soybean | plasma membrane | 59.49 | 61.64 |
| KRH70041 | Soybean | plasma membrane | 59.18 | 61.11 |
| CDY22146 | Canola | plasma membrane | 57.28 | 60.94 |
| CDY28006 | Canola | plasma membrane | 56.96 | 60.61 |
| Bra040042.1-P | Field mustard | plasma membrane | 57.59 | 59.67 |
| CDY35975 | Canola | plasma membrane | 55.7 | 59.26 |
| Bra029689.1-P | Field mustard | plasma membrane | 56.33 | 58.55 |
| AT3G07950.1 | Thale cress | plasma membrane | 55.7 | 57.89 |
| KRH34890 | Soybean | plasma membrane | 59.49 | 57.85 |
| KRH75962 | Soybean | endoplasmic reticulum, vacuole | 25.63 | 56.64 |
| KRG91881 | Soybean | extracellular, golgi, plasma membrane | 33.23 | 51.72 |
| Os04t0103300-01 | Rice | peroxisome | 46.2 | 45.91 |
Protein Annotations
| MapMan:19.4.2.6 | EntrezGene:4344140 | ProteinID:BAC83942.1 | ProteinID:BAF22410.1 | ProteinID:BAT02992.1 | InterPro:DUF1751_Mem_euk |
| ProteinID:EEE67727.1 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005794 |
| GO:GO:0006810 | GO:GO:0006890 | GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016021 | EnsemblPlantsGene:Os07g0655400 |
| EnsemblPlants:Os07t0655400-01 | PFAM:PF08551 | PANTHER:PTHR13377 | PANTHER:PTHR13377:SF6 | UniProt:Q7EYZ3 | SMART:SM01160 |
| SUPFAM:SSF144091 | TMHMM:TMhelix | UniParc:UPI00001BF4EA | RefSeq:XP_015646897.1 | SEG:seg | : |
Description
Rhomboid 13, RHOMBOID 13Protein of unknown function DUF1751, integral membrane, eukaryotic domain containing protein. (Os07t0655400-01)
Coordinates
chr7:+:27550899..27555186
Molecular Weight (calculated)
35012.1 Da
IEP (calculated)
9.202
GRAVY (calculated)
0.375
Length
316 amino acids
Sequence
(BLAST)
(BLAST)
001: MMSSSSSPPP PSIPTGGGGF FRGYTKLCKG LAVILLLVHL LIQLFPSAVT YLALVPGRTI PFAWNLITGG YVELTIPGVI ISIVGLLLFG KLLEPLWGSK
101: ELSKFIFVVN FSTSLCVFIT AIALYYTTQE ESYLYAPLSG FYGVLTGLLV GIKQLMSEQE LNLFVLKIKA KWIPSLVALI SVIVSFFVKE LVSYLPVILF
201: GIYMSWIYLR YFQRRLETGL KGDPSEEFSF SSFFPEFLRP VLDPIASIFH RLLCGRSERA DARGQTLDTT PLPGSDSIEA NRRRERGQRA LEQRLAEKLA
301: AVKSSEGTSQ DASDKV
101: ELSKFIFVVN FSTSLCVFIT AIALYYTTQE ESYLYAPLSG FYGVLTGLLV GIKQLMSEQE LNLFVLKIKA KWIPSLVALI SVIVSFFVKE LVSYLPVILF
201: GIYMSWIYLR YFQRRLETGL KGDPSEEFSF SSFFPEFLRP VLDPIASIFH RLLCGRSERA DARGQTLDTT PLPGSDSIEA NRRRERGQRA LEQRLAEKLA
301: AVKSSEGTSQ DASDKV
001: MSSPGTSMFT NFTKLCKGLA LVLVVGHLVV QFIPATVPYL ALIPARTIPF AWNLITSGYF ELSVYGVVFS TVSLLFMGKF LEPVWGSTEF LKFIFVVNFL
101: TYLCVFVTAI ALYYITRLEV YLYMPFAGFH GVLAGLLVGI KQIIPDQEIL LLKIKAKWLP SIMLILSIAS SFFTLDSAAY LPTLIFGTYM GWLYLRYLQR
201: RPETKLRGDP SDDFAFSTFF PELLRPVIDP IALIFHRMLC GRSNATSEDH DYSTSGAPLP GSDSAEASRR RERGARALEE RLGTERLVPA RNKDELQSDG
301: LDNV
101: TYLCVFVTAI ALYYITRLEV YLYMPFAGFH GVLAGLLVGI KQIIPDQEIL LLKIKAKWLP SIMLILSIAS SFFTLDSAAY LPTLIFGTYM GWLYLRYLQR
201: RPETKLRGDP SDDFAFSTFF PELLRPVIDP IALIFHRMLC GRSNATSEDH DYSTSGAPLP GSDSAEASRR RERGARALEE RLGTERLVPA RNKDELQSDG
301: LDNV
Arabidopsis Description
RBL19Rhomboid-like protein 19 [Source:UniProtKB/Swiss-Prot;Acc:Q8LF05]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.