Factsheet for TraesCS2D01G138200.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

plastid 3
golgi 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	golgi, plasma membrane, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	golgi
Predotar:	plastid
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G346700.1
TraesCS2B01G365000.1
TraesCS2D01G345400.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G07950.1	TraesCS2A01G346700.1	AT1G27300.1	21798944
AT3G07950.1	TraesCS2B01G365000.1	AT1G27300.1	21798944
AT3G07950.1	TraesCS2D01G345400.1	AT1G27300.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G135700.1	Wheat	plasma membrane, plastid	100.0	100.0
TraesCS2B01G159600.1	Wheat	plasma membrane, plastid	99.68	99.68
Os07t0655400-01	Rice	plastid	84.71	84.18
EER99823	Sorghum	plasma membrane	83.76	83.49
HORVU0Hr1G002680.2	Barley	golgi	73.57	82.5
GSMUA_Achr4P20820_001	Banana	endoplasmic reticulum, plasma membrane, plastid	68.79	67.92
Zm00001d007067_P003	Maize	plasma membrane	80.89	67.73
GSMUA_Achr7P01900_001	Banana	endoplasmic reticulum, mitochondrion, plasma membrane, plastid	66.56	65.72
Solyc04g049180.2.1	Tomato	extracellular, golgi, vacuole	48.73	63.22
VIT_13s0019g04120.t01	Wine grape	plasma membrane, plastid	59.87	60.45
KRH08383	Soybean	plasma membrane	57.96	59.67
KRH70041	Soybean	plasma membrane	57.64	59.15
CDY22146	Canola	plasma membrane	55.1	58.25
Bra040042.1-P	Field mustard	plasma membrane	55.73	57.38
CDY28006	Canola	plasma membrane	54.14	57.24
AT3G07950.1	Thale cress	plasma membrane	54.78	56.58
Bra029689.1-P	Field mustard	plasma membrane	54.46	56.25
CDY35975	Canola	plasma membrane	53.18	56.23
KRH34890	Soybean	plasma membrane	57.96	56.0
KRH75962	Soybean	endoplasmic reticulum, vacuole	23.89	52.45
KRG91881	Soybean	extracellular, golgi, plasma membrane	30.57	47.29
TraesCS2D01G038700.1	Wheat	plasma membrane	47.13	46.4

Protein Annotations

EnsemblPlants:TraesCS2D01G138200.1	EnsemblPlantsGene:TraesCS2D01G138200	GO:GO:0005575	GO:GO:0006810	GO:GO:0006890	GO:GO:0008150
GO:GO:0016020	GO:GO:0016021	InterPro:DUF1751_Mem_euk	PANTHER:PTHR13377	PANTHER:PTHR13377:SF6	PFAM:PF08551
SEG:seg	SMART:SM01160	SUPFAM:SSF144091	TMHMM:TMhelix	MapMan:19.4.2.6	:

Description

No Description!

Coordinates

chr2D:-:81311009..81314780

Molecular Weight (calculated)

34847.1 Da

IEP (calculated)

9.535

GRAVY (calculated)

0.414

Length

314 amino acids

Sequence
(BLAST)

001: MMSSVSPPAP SLPSGGGSFF RGYTKLCKGL AVILLLVHLL VQLFPSAVNY LALIPARTIP FAWNLITAGY VEQTIPGVII SIIGLLLFGK LLEPLWGTKE
101: LSKFVFIVNF STSMCVFVTA IAVYYVTQQE SYLYTPLSGF YGVLSGLLVG IKQLMPEMEL NLFVLKIKGK WIPSLIALIS VVVSFFMKDL VSYLPVILFG
201: IYMSWIYLRY FQKRLETGLK GDPSEEFSFS SFFPAILRPV LDPIATIFHR LLCGRSDRAD RGQTLETSSL PGSDSTEANR RRERGQRALE QRLAEKLAAV
301: KSTESTSLDA SDKV

Best Arabidopsis Sequence Match ( AT3G07950.1 )
(BLAST)

001: MSSPGTSMFT NFTKLCKGLA LVLVVGHLVV QFIPATVPYL ALIPARTIPF AWNLITSGYF ELSVYGVVFS TVSLLFMGKF LEPVWGSTEF LKFIFVVNFL
101: TYLCVFVTAI ALYYITRLEV YLYMPFAGFH GVLAGLLVGI KQIIPDQEIL LLKIKAKWLP SIMLILSIAS SFFTLDSAAY LPTLIFGTYM GWLYLRYLQR
201: RPETKLRGDP SDDFAFSTFF PELLRPVIDP IALIFHRMLC GRSNATSEDH DYSTSGAPLP GSDSAEASRR RERGARALEE RLGTERLVPA RNKDELQSDG
301: LDNV

Arabidopsis Description

RBL19Rhomboid-like protein 19 [Source:UniProtKB/Swiss-Prot;Acc:Q8LF05]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.