CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, vacuole

Predictor Summary:

nucleus 1
extracellular 3
golgi 3
plasma membrane 4
endoplasmic reticulum 4
vacuole 4
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, vacuole
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	vacuole

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG97393
KRH11076
KRH21197
KRH31520
KRH42923
KRH42926
KRH45251
KRH59035
KRH59036
KRH76090

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G07950.1	KRG97393	AT1G27300.1	21798944
AT3G07950.1	KRH31520	AT1G27300.1	21798944
AT3G07950.1	KRH76090	AT1G27300.1	21798944
AT3G07950.1	KRH11076	AT4G19030.1	21798944
AT3G07950.1	KRH21197	AT4G19030.1	21798944
AT3G07950.1	KRH42923	AT4G19030.1	21798944
AT3G07950.1	KRH42926	AT4G19030.1	21798944
AT3G07950.1	KRH45251	AT4G19030.1	21798944
AT3G07950.1	KRH59035	AT4G19030.1	21798944
AT3G07950.1	KRH59036	AT4G19030.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH70041	Soybean	plasma membrane	86.71	40.52
KRH08383	Soybean	plasma membrane	83.22	39.02
Solyc04g049180.2.1	Tomato	extracellular, golgi, vacuole	62.24	36.78
KRH34890	Soybean	plasma membrane	74.13	32.62
CDY28006	Canola	plasma membrane	63.64	30.64
CDY35975	Canola	plasma membrane	63.64	30.64
CDY22146	Canola	plasma membrane	62.94	30.3
Bra029689.1-P	Field mustard	plasma membrane	63.64	29.93
AT3G07950.1	Thale cress	plasma membrane	63.64	29.93
VIT_13s0019g04120.t01	Wine grape	plasma membrane, plastid	64.34	29.58
Bra040042.1-P	Field mustard	plasma membrane	62.94	29.51
KRG91881	Soybean	extracellular, golgi, plasma membrane	41.26	29.06
HORVU0Hr1G002680.2	Barley	golgi	53.85	27.5
Os07t0655400-01	Rice	plastid	56.64	25.63
GSMUA_Achr7P01900_001	Banana	endoplasmic reticulum, mitochondrion, plasma membrane, plastid	55.24	24.84
GSMUA_Achr4P20820_001	Banana	endoplasmic reticulum, plasma membrane, plastid	54.55	24.53
EER99823	Sorghum	plasma membrane	53.85	24.44
TraesCS2B01G159600.1	Wheat	plasma membrane, plastid	53.15	24.2
TraesCS2D01G138200.1	Wheat	golgi	52.45	23.89
TraesCS2A01G135700.1	Wheat	plasma membrane, plastid	52.45	23.89
EER92238	Sorghum	plastid	51.75	23.05
Os03t0358200-00	Rice	golgi	49.65	22.61
Zm00001d029226_P001	Maize	plasma membrane	51.05	21.66
Zm00001d047446_P002	Maize	plasma membrane, plastid	49.65	20.34
Zm00001d007067_P003	Maize	plasma membrane	51.75	19.73
Os04t0103300-01	Rice	peroxisome	40.56	18.24
EES11733	Sorghum	plasma membrane	39.86	17.87
Zm00001d004543_P001	Maize	extracellular	39.86	17.76
Zm00001d024933_P003	Maize	plasma membrane	39.16	17.55
TraesCS2B01G053000.1	Wheat	plasma membrane	38.46	17.35
TraesCS2A01G040100.2	Wheat	golgi, unclear	38.46	17.24
TraesCS2D01G038700.1	Wheat	plasma membrane	38.46	17.24
HORVU2Hr1G006030.4	Barley	golgi, plasma membrane	39.16	16.82

Protein Annotations

MapMan:19.4.2.6	EMBL:ACUP02000530	EnsemblPlantsGene:GLYMA_01G120700	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005794	GO:GO:0006810	GO:GO:0006890	GO:GO:0008150	GO:GO:0016020
GO:GO:0016021	UniProt:K7K3D3	EnsemblPlants:KRH75962	ProteinID:KRH75962	ProteinID:KRH75962.1	PANTHER:PTHR13377
PANTHER:PTHR13377:SF6	TMHMM:TMhelix	UniParc:UPI000294D0DB	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:41357452..41358034

Molecular Weight (calculated)

16282.4 Da

IEP (calculated)

5.628

GRAVY (calculated)

-0.018

Length

143 amino acids

Sequence
(BLAST)

001: MDCSSYMPLS GFHGVVSGFL VGIKFDTLLW LSSIPVLLSI AISFWTLEAT TYLPTIIFGT YISWIYLRYW QRKPETKHRG DLSEDFAFST FSPEFLRLVI
101: DPIASIFHRM LNGRYDASND GQGNNMESEP LPGSDSIEAS RRR

Best Arabidopsis Sequence Match ( AT3G07950.1 )
(BLAST)

001: MSSPGTSMFT NFTKLCKGLA LVLVVGHLVV QFIPATVPYL ALIPARTIPF AWNLITSGYF ELSVYGVVFS TVSLLFMGKF LEPVWGSTEF LKFIFVVNFL
101: TYLCVFVTAI ALYYITRLEV YLYMPFAGFH GVLAGLLVGI KQIIPDQEIL LLKIKAKWLP SIMLILSIAS SFFTLDSAAY LPTLIFGTYM GWLYLRYLQR
201: RPETKLRGDP SDDFAFSTFF PELLRPVIDP IALIFHRMLC GRSNATSEDH DYSTSGAPLP GSDSAEASRR RERGARALEE RLGTERLVPA RNKDELQSDG
301: LDNV

Arabidopsis Description

RBL19Rhomboid-like protein 19 [Source:UniProtKB/Swiss-Prot;Acc:Q8LF05]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.