Factsheet for HORVU2Hr1G006030.4

Subcellular Localization

min:

: max

Winner_takes_all: golgi, plasma membrane

Predictor Summary:

extracellular 2
golgi 3
plasma membrane 3
endoplasmic reticulum 2
vacuole 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, plasma membrane
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	golgi
TargetP:	secretory
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU2Hr1G084420.1
HORVU7Hr1G088900.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G07950.1	HORVU2Hr1G084420.1	AT1G27300.1	21798944
AT3G07950.1	HORVU7Hr1G088900.1	AT4G19030.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G040100.2	Wheat	golgi, unclear	85.89	89.66
TraesCS2B01G053000.1	Wheat	plasma membrane	84.68	88.96
TraesCS2D01G038700.1	Wheat	plasma membrane	84.08	87.77
Os04t0103300-01	Rice	peroxisome	81.38	85.22
EES11733	Sorghum	plasma membrane	77.78	81.19
Zm00001d004543_P001	Maize	extracellular	78.08	81.0
Zm00001d024933_P003	Maize	plasma membrane	77.48	80.88
Solyc04g049180.2.1	Tomato	extracellular, golgi, vacuole	34.83	47.93
KRH08383	Soybean	plasma membrane	43.54	47.54
KRH70041	Soybean	plasma membrane	43.54	47.39
VIT_13s0019g04120.t01	Wine grape	plasma membrane, plastid	43.54	46.62
KRH34890	Soybean	plasma membrane	44.44	45.54
CDY22146	Canola	plasma membrane	40.54	45.45
AT3G07950.1	Thale cress	plasma membrane	41.44	45.39
CDY35975	Canola	plasma membrane	40.24	45.12
CDY28006	Canola	plasma membrane	40.24	45.12
Bra029689.1-P	Field mustard	plasma membrane	41.14	45.07
Bra040042.1-P	Field mustard	plasma membrane	41.14	44.92
HORVU0Hr1G002680.2	Barley	golgi	34.83	41.43
KRH75962	Soybean	endoplasmic reticulum, vacuole	16.82	39.16
KRG91881	Soybean	extracellular, golgi, plasma membrane	22.82	37.44

Protein Annotations

EnsemblPlants:HORVU2Hr1G006030.4	EnsemblPlantsGene:HORVU2Hr1G006030	GO:GO:0005575	GO:GO:0006810	GO:GO:0006890	GO:GO:0008150
GO:GO:0016020	GO:GO:0016021	InterPro:DUF1751_Mem_euk	PANTHER:PTHR13377	PANTHER:PTHR13377:SF5	PFAM:PF08551
SEG:seg	SMART:SM01160	SUPFAM:SSF144091	TMHMM:TMhelix	UniParc:UPI000B486C53	UniProt:A0A287GZD0
MapMan:19.4.2.6	:	:	:	:	:

Description

No Description!

Coordinates

chrchr2H:-:12867563..12869929

Molecular Weight (calculated)

36689.5 Da

IEP (calculated)

8.195

GRAVY (calculated)

0.516

Length

333 amino acids

Sequence
(BLAST)

001: SIWRLAGRAG QQLIACLAAQ ICVCWSIVVD CLLTGGVSLL LARVQVPGKE FTRTCKGLVV VLIGGYVLLQ LLPSSLNYLA IIPAKTIPFV WTVFTAGYIE
101: QVLPGVAIGS SLGLLFCGKD IEPVWGRKEF LKFIILINSI CGVLAFCIAV ALYYVTGKES FLVTPLSGFH GALAGFLVGL KQLLPNLELP MCFFWKIKAK
201: WMPFFVMCFS TIMAFIVPDS INFLPTLLSG MYVSWLYLRY FQRNPLTGLK GDPSDDFSFP SLFPDAMRPV TDPVANMFDR MLCARSKTSE IALPVTDPTK
301: ASRRRERGER VLEERMAADH AADAEAPAHS AED

Best Arabidopsis Sequence Match ( AT3G07950.1 )
(BLAST)

001: MSSPGTSMFT NFTKLCKGLA LVLVVGHLVV QFIPATVPYL ALIPARTIPF AWNLITSGYF ELSVYGVVFS TVSLLFMGKF LEPVWGSTEF LKFIFVVNFL
101: TYLCVFVTAI ALYYITRLEV YLYMPFAGFH GVLAGLLVGI KQIIPDQEIL LLKIKAKWLP SIMLILSIAS SFFTLDSAAY LPTLIFGTYM GWLYLRYLQR
201: RPETKLRGDP SDDFAFSTFF PELLRPVIDP IALIFHRMLC GRSNATSEDH DYSTSGAPLP GSDSAEASRR RERGARALEE RLGTERLVPA RNKDELQSDG
301: LDNV

Arabidopsis Description

RBL19Rhomboid-like protein 19 [Source:UniProtKB/Swiss-Prot;Acc:Q8LF05]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.