Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, endoplasmic reticulum, plastid, plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 3
- endoplasmic reticulum 2
- plasma membrane 3
- extracellular 1
- vacuole 1
- golgi 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr4P10230_001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G07950.1 | GSMUA_Achr4P10230_001 | AT4G19030.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr4P20820_001 | Banana | endoplasmic reticulum, plasma membrane, plastid | 85.85 | 85.85 |
| Os07t0655400-01 | Rice | plastid | 68.24 | 68.67 |
| EER99823 | Sorghum | plasma membrane | 67.61 | 68.25 |
| TraesCS2B01G159600.1 | Wheat | plasma membrane, plastid | 66.04 | 66.88 |
| TraesCS2A01G135700.1 | Wheat | plasma membrane, plastid | 65.72 | 66.56 |
| TraesCS2D01G138200.1 | Wheat | golgi | 65.72 | 66.56 |
| Solyc04g049180.2.1 | Tomato | extracellular, golgi, vacuole | 50.63 | 66.53 |
| EER92238 | Sorghum | plastid | 66.04 | 65.42 |
| Os03t0358200-00 | Rice | golgi | 64.47 | 65.29 |
| KRH08383 | Soybean | plasma membrane | 61.95 | 64.59 |
| VIT_13s0019g04120.t01 | Wine grape | plasma membrane, plastid | 62.89 | 64.31 |
| KRH70041 | Soybean | plasma membrane | 61.32 | 63.73 |
| CDY22146 | Canola | plasma membrane | 58.18 | 62.29 |
| CDY28006 | Canola | plasma membrane | 57.55 | 61.62 |
| Bra040042.1-P | Field mustard | plasma membrane | 58.49 | 60.98 |
| CDY35975 | Canola | plasma membrane | 56.92 | 60.94 |
| Zm00001d029226_P001 | Maize | plasma membrane | 63.84 | 60.24 |
| Bra029689.1-P | Field mustard | plasma membrane | 57.55 | 60.2 |
| AT3G07950.1 | Thale cress | plasma membrane | 57.23 | 59.87 |
| Zm00001d047446_P002 | Maize | plasma membrane, plastid | 65.41 | 59.6 |
| HORVU0Hr1G002680.2 | Barley | golgi | 52.2 | 59.29 |
| KRH34890 | Soybean | plasma membrane | 60.38 | 59.08 |
| Zm00001d007067_P003 | Maize | plasma membrane | 67.61 | 57.33 |
| KRH75962 | Soybean | endoplasmic reticulum, vacuole | 24.84 | 55.24 |
| KRG91881 | Soybean | extracellular, golgi, plasma membrane | 31.76 | 49.75 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr7P01900_001 | EnsemblPlants:GSMUA_Achr7T01900_001 | EnsemblPlantsGene:GSMUA_Achr7G01900_001 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0006890 |
| GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016021 | InterPro:DUF1751_Mem_euk | PANTHER:PTHR13377 | PANTHER:PTHR13377:SF6 |
| PFAM:PF08551 | SEG:seg | SMART:SM01160 | SUPFAM:SSF144091 | TMHMM:TMhelix | UniParc:UPI0002951BFF |
| UniProt:M0TDY0 | MapMan:19.4.2.6 | : | : | : | : |
Description
Putative Transmembrane protein 115 [Source:GMGC_GENE;Acc:GSMUA_Achr7G01900_001]
Coordinates
chr7:-:1491304..1502109
Molecular Weight (calculated)
35233.9 Da
IEP (calculated)
8.431
GRAVY (calculated)
0.354
Length
318 amino acids
Sequence
(BLAST)
(BLAST)
001: MLSSSSPPQP LQTGGSRFHA GFTRLCKGLA VVLVGGYVLL QIFPSILPYV VLIPSRTIPF AWNLITAGYV EQSILGVAIS TVGLLLFGRW LEPLWGSKEF
101: LKFIIVVNLL TSICVFVTAI ALYYITRQES YLYTAFSGFH GVLSGFLVGL KQILPDQELS LFILKIKAKW MPTLVALISV ATSFFTMDSV SYLPTVLFGI
201: YMSWIYLRYF QRRPETSHKG DPSDDFSFSS FFPEFLRPVL DPIASLFHWV FCGRISDSSA DTRGDTLDGS LMPGSDSIDA IRRRERGARA LEQRLAAEKL
301: SATGKLEGTS HEGAAENV
101: LKFIIVVNLL TSICVFVTAI ALYYITRQES YLYTAFSGFH GVLSGFLVGL KQILPDQELS LFILKIKAKW MPTLVALISV ATSFFTMDSV SYLPTVLFGI
201: YMSWIYLRYF QRRPETSHKG DPSDDFSFSS FFPEFLRPVL DPIASLFHWV FCGRISDSSA DTRGDTLDGS LMPGSDSIDA IRRRERGARA LEQRLAAEKL
301: SATGKLEGTS HEGAAENV
001: MSSPGTSMFT NFTKLCKGLA LVLVVGHLVV QFIPATVPYL ALIPARTIPF AWNLITSGYF ELSVYGVVFS TVSLLFMGKF LEPVWGSTEF LKFIFVVNFL
101: TYLCVFVTAI ALYYITRLEV YLYMPFAGFH GVLAGLLVGI KQIIPDQEIL LLKIKAKWLP SIMLILSIAS SFFTLDSAAY LPTLIFGTYM GWLYLRYLQR
201: RPETKLRGDP SDDFAFSTFF PELLRPVIDP IALIFHRMLC GRSNATSEDH DYSTSGAPLP GSDSAEASRR RERGARALEE RLGTERLVPA RNKDELQSDG
301: LDNV
101: TYLCVFVTAI ALYYITRLEV YLYMPFAGFH GVLAGLLVGI KQIIPDQEIL LLKIKAKWLP SIMLILSIAS SFFTLDSAAY LPTLIFGTYM GWLYLRYLQR
201: RPETKLRGDP SDDFAFSTFF PELLRPVIDP IALIFHRMLC GRSNATSEDH DYSTSGAPLP GSDSAEASRR RERGARALEE RLGTERLVPA RNKDELQSDG
301: LDNV
Arabidopsis Description
RBL19Rhomboid-like protein 19 [Source:UniProtKB/Swiss-Prot;Acc:Q8LF05]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.