Factsheet for Zm00001d047446_P002

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid

Predictor Summary:

plastid 2
mitochondrion 2
endoplasmic reticulum 2
extracellular 1
vacuole 1
plasma membrane 3
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane, plastid
Any Predictor:	mitochondrion, plastid, secretory
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	endoplasmic reticulum
Predotar:	plastid
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d016570_P001
Zm00001d050563_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G07950.1	Zm00001d016570_P001	AT1G27300.1	21798944
AT3G07950.1	Zm00001d050563_P001	AT1G27300.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER92238	Sorghum	plastid	85.67	93.15
Zm00001d029226_P001	Maize	plasma membrane	80.8	83.68
Os03t0358200-00	Rice	golgi	68.48	76.11
GSMUA_Achr4P20820_001	Banana	endoplasmic reticulum, plasma membrane, plastid	60.17	66.04
GSMUA_Achr7P01900_001	Banana	endoplasmic reticulum, mitochondrion, plasma membrane, plastid	59.6	65.41
Zm00001d007067_P003	Maize	plasma membrane	66.48	61.87
VIT_13s0019g04120.t01	Wine grape	plasma membrane, plastid	53.87	60.45
CDY22146	Canola	plasma membrane	50.43	59.26
CDY28006	Canola	plasma membrane	50.14	58.92
KRH08383	Soybean	plasma membrane	51.29	58.69
KRH70041	Soybean	plasma membrane	51.29	58.5
Solyc04g049180.2.1	Tomato	extracellular, golgi, vacuole	40.4	58.26
CDY35975	Canola	plasma membrane	49.57	58.25
Bra040042.1-P	Field mustard	plasma membrane	50.43	57.7
Bra029689.1-P	Field mustard	plasma membrane	50.14	57.57
KRH34890	Soybean	plasma membrane	51.86	55.69
AT3G07950.1	Thale cress	plasma membrane	48.42	55.59
KRH75962	Soybean	endoplasmic reticulum, vacuole	20.34	49.65
KRG91881	Soybean	extracellular, golgi, plasma membrane	26.07	44.83
Zm00001d024933_P003	Maize	plasma membrane	40.11	43.89
Zm00001d004543_P001	Maize	extracellular	39.83	43.3

Protein Annotations

EnsemblPlants:Zm00001d047446_P002	EnsemblPlants:Zm00001d047446_T002	EnsemblPlantsGene:Zm00001d047446	EntrezGene:100272463	GO:GO:0005575	GO:GO:0006810
GO:GO:0006890	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	InterPro:DUF1751_Mem_euk	ncoils:Coil
PANTHER:PTHR13377	PANTHER:PTHR13377:SF6	PFAM:PF08551	ProteinID:AQL06459.1	SEG:seg	SMART:SM01160
SUPFAM:SSF144091	TMHMM:TMhelix	UniParc:UPI000842CB86	UniProt:A0A1D6P9I8	MapMan:19.4.2.6	:

Description

Rhomboid-like protein 19

Coordinates

chr9:+:130359616..130363873

Molecular Weight (calculated)

38890.7 Da

IEP (calculated)

8.654

GRAVY (calculated)

0.320

Length

349 amino acids

Sequence
(BLAST)

001: MSASAAPAPA AGGRFFTGFT RLCKGLAVVL LLAHILVHLF PSAATYLTLI PARTIPFAWN LVTAGYIEQT IPGVCLLSTS PIYFRQWHPY LTRLPCFQVI
101: VSIVGLLLFG KVLEPLWGAK ELLKFIFIVN LSISACVFVT MIVLYYITQE ESYLYTPVSG FYGVLSGLLV GIKQILPDQE LNLFVFKISA KWIPSIVAFI
201: SVAVSFFMKE VMSYLPIILF GIYMSWIYLR YFQRRLEVGL KGDPSDEFSF SSFFPGFLRP ILDPIASVFH KLFCGRSARP EGTGQTLDGS QFPGSGSTEA
301: NRRRERGQKA LEQRLAEKLA AVRKAEGTPP PKQQQEEEED AENDASDKV

Best Arabidopsis Sequence Match ( AT3G07950.1 )
(BLAST)

001: MSSPGTSMFT NFTKLCKGLA LVLVVGHLVV QFIPATVPYL ALIPARTIPF AWNLITSGYF ELSVYGVVFS TVSLLFMGKF LEPVWGSTEF LKFIFVVNFL
101: TYLCVFVTAI ALYYITRLEV YLYMPFAGFH GVLAGLLVGI KQIIPDQEIL LLKIKAKWLP SIMLILSIAS SFFTLDSAAY LPTLIFGTYM GWLYLRYLQR
201: RPETKLRGDP SDDFAFSTFF PELLRPVIDP IALIFHRMLC GRSNATSEDH DYSTSGAPLP GSDSAEASRR RERGARALEE RLGTERLVPA RNKDELQSDG
301: LDNV

Arabidopsis Description

RBL19Rhomboid-like protein 19 [Source:UniProtKB/Swiss-Prot;Acc:Q8LF05]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.