Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 2
- endoplasmic reticulum 2
- plasma membrane 3
- extracellular 1
- vacuole 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| EES05123 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G07950.1 | EES05123 | AT1G27300.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d047446_P002 | Maize | plasma membrane, plastid | 93.15 | 85.67 |
| Os03t0358200-00 | Rice | golgi | 75.39 | 77.07 |
| EER99823 | Sorghum | plasma membrane | 74.45 | 75.87 |
| GSMUA_Achr4P20820_001 | Banana | endoplasmic reticulum, plasma membrane, plastid | 66.98 | 67.61 |
| GSMUA_Achr7P01900_001 | Banana | endoplasmic reticulum, mitochondrion, plasma membrane, plastid | 65.42 | 66.04 |
| VIT_13s0019g04120.t01 | Wine grape | plasma membrane, plastid | 58.88 | 60.77 |
| CDY22146 | Canola | plasma membrane | 56.07 | 60.61 |
| Solyc04g049180.2.1 | Tomato | extracellular, golgi, vacuole | 45.48 | 60.33 |
| CDY28006 | Canola | plasma membrane | 55.76 | 60.27 |
| KRH08383 | Soybean | plasma membrane | 56.7 | 59.67 |
| CDY35975 | Canola | plasma membrane | 55.14 | 59.6 |
| KRH70041 | Soybean | plasma membrane | 56.7 | 59.48 |
| Bra040042.1-P | Field mustard | plasma membrane | 56.07 | 59.02 |
| Bra029689.1-P | Field mustard | plasma membrane | 55.76 | 58.88 |
| AT3G07950.1 | Thale cress | plasma membrane | 54.21 | 57.24 |
| KRH34890 | Soybean | plasma membrane | 57.94 | 57.23 |
| KRH75962 | Soybean | endoplasmic reticulum, vacuole | 23.05 | 51.75 |
| KRG91881 | Soybean | extracellular, golgi, plasma membrane | 29.59 | 46.8 |
| EES11733 | Sorghum | plasma membrane | 42.37 | 42.63 |
Protein Annotations
| MapMan:19.4.2.6 | EntrezGene:8082619 | UniProt:C5WZM4 | InterPro:DUF1751_Mem_euk | EnsemblPlants:EER92238 | ProteinID:EER92238 |
| ProteinID:EER92238.1 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0003924 | GO:GO:0004252 |
| GO:GO:0005488 | GO:GO:0005525 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005794 | GO:GO:0006810 | GO:GO:0006890 | GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016021 |
| GO:GO:0016787 | PFAM:PF08551 | PANTHER:PTHR13377 | PANTHER:PTHR13377:SF6 | SMART:SM01160 | EnsemblPlantsGene:SORBI_3001G365700 |
| SUPFAM:SSF144091 | TMHMM:TMhelix | UniParc:UPI0001A820D9 | RefSeq:XP_002465240.1 | SEG:seg | : |
Description
hypothetical protein
Coordinates
chr1:+:65424737..65428881
Molecular Weight (calculated)
35587.6 Da
IEP (calculated)
9.232
GRAVY (calculated)
0.326
Length
321 amino acids
Sequence
(BLAST)
(BLAST)
001: MSASATPTPA AGRRFFTGFT RLCKGLAVIL FLAHILVHLF PSAATYLTLI PARTIPFAWN LVTAGYIEQT IPGVIVSIVG LLLFGKVLEP LWGAKELLKF
101: IFIVNLSTSA CVFVTTIVLY YITQEESYLY TPVSGFYGVL SGLLVGIKQI LPDQELNLLV LKISAKWIPS IVAFISVAVS FFIKESMSYL PIILFGIYMS
201: WIYLRYFQRR LEVGLKGDPS DEFSFSSFFP GFLRPILDPI ASIFHKLFCG RSARPEGTGQ TLDGSQFPGS GSIEANRRRE RGQRALEQRL AEKLAAVRNA
301: EGTPPPKQQR EDAEDDASDK V
101: IFIVNLSTSA CVFVTTIVLY YITQEESYLY TPVSGFYGVL SGLLVGIKQI LPDQELNLLV LKISAKWIPS IVAFISVAVS FFIKESMSYL PIILFGIYMS
201: WIYLRYFQRR LEVGLKGDPS DEFSFSSFFP GFLRPILDPI ASIFHKLFCG RSARPEGTGQ TLDGSQFPGS GSIEANRRRE RGQRALEQRL AEKLAAVRNA
301: EGTPPPKQQR EDAEDDASDK V
001: MSSPGTSMFT NFTKLCKGLA LVLVVGHLVV QFIPATVPYL ALIPARTIPF AWNLITSGYF ELSVYGVVFS TVSLLFMGKF LEPVWGSTEF LKFIFVVNFL
101: TYLCVFVTAI ALYYITRLEV YLYMPFAGFH GVLAGLLVGI KQIIPDQEIL LLKIKAKWLP SIMLILSIAS SFFTLDSAAY LPTLIFGTYM GWLYLRYLQR
201: RPETKLRGDP SDDFAFSTFF PELLRPVIDP IALIFHRMLC GRSNATSEDH DYSTSGAPLP GSDSAEASRR RERGARALEE RLGTERLVPA RNKDELQSDG
301: LDNV
101: TYLCVFVTAI ALYYITRLEV YLYMPFAGFH GVLAGLLVGI KQIIPDQEIL LLKIKAKWLP SIMLILSIAS SFFTLDSAAY LPTLIFGTYM GWLYLRYLQR
201: RPETKLRGDP SDDFAFSTFF PELLRPVIDP IALIFHRMLC GRSNATSEDH DYSTSGAPLP GSDSAEASRR RERGARALEE RLGTERLVPA RNKDELQSDG
301: LDNV
Arabidopsis Description
RBL19Rhomboid-like protein 19 [Source:UniProtKB/Swiss-Prot;Acc:Q8LF05]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.