Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d050563_P001 | Maize | nucleus | 66.98 | 71.29 |
| TraesCS2B01G365000.1 | Wheat | cytosol | 47.91 | 53.65 |
| HORVU2Hr1G084420.1 | Barley | cytosol | 47.91 | 53.65 |
| TraesCS2D01G345400.1 | Wheat | cytosol | 48.84 | 53.57 |
| TraesCS2A01G346700.1 | Wheat | cytosol | 46.98 | 52.06 |
| Os02t0509600-01 | Rice | plasma membrane | 47.44 | 48.34 |
| KRH31520 | Soybean | cytosol | 21.86 | 30.92 |
| VIT_01s0010g03800.t01 | Wine grape | cytosol | 27.44 | 30.1 |
| KRG97393 | Soybean | nucleus | 25.58 | 29.26 |
| PGSC0003DMT400084737 | Potato | cytosol | 25.58 | 26.57 |
| KRH76090 | Soybean | nucleus | 13.95 | 26.09 |
| AT1G27300.1 | Thale cress | nucleus | 24.19 | 26.0 |
| Solyc05g015640.2.1 | Tomato | cytosol | 24.19 | 25.74 |
| CDX84933 | Canola | cytosol | 22.79 | 24.87 |
| CDY03907 | Canola | cytosol | 21.86 | 24.23 |
| Bra030034.1-P | Field mustard | cytosol | 21.86 | 23.74 |
| CDY27605 | Canola | cytosol | 21.86 | 23.38 |
| CDY15722 | Canola | cytosol | 21.4 | 23.23 |
| Bra032817.1-P | Field mustard | nucleus | 21.4 | 22.89 |
Protein Annotations
| EnsemblPlants:EES05123 | EnsemblPlantsGene:SORBI_3004G155400 | EntrezGene:8059585 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| PANTHER:PTHR35280 | ProteinID:EES05123 | ProteinID:EES05123.1 | RefSeq:XP_002452147.1 | SEG:seg | TMHMM:TMhelix |
| UniParc:UPI0001A855FE | UniProt:C5XSL9 | MapMan:35.2 | : | : | : |
Description
hypothetical protein
Coordinates
chr4:+:49225007..49227084
Molecular Weight (calculated)
23930.5 Da
IEP (calculated)
4.862
GRAVY (calculated)
-0.607
Length
215 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLRNRRDDD ALNGGVGVDE TMRRKKKVEL VQEAIHGFLE EKKGSDGQGQ DKRLTARQDE QELLSSLLTK LGELEIDADS DILEPSSSHL DHQQPAGRKG
101: EQSKEEEEEE EEEVVELADI AKDLSKIKRQ NMITHLLLGT VIVLTAVWQV NEVSFLLWVQ NKLSNPFKSL GDMIKASLKL RGRRPVLESS PLPPAGVPDV
201: SRSDLPTLVI GGHGR
101: EQSKEEEEEE EEEVVELADI AKDLSKIKRQ NMITHLLLGT VIVLTAVWQV NEVSFLLWVQ NKLSNPFKSL GDMIKASLKL RGRRPVLESS PLPPAGVPDV
201: SRSDLPTLVI GGHGR
001: MESSEDVENL SRAIEKLLHE KRKREASGDA FIEDADDQLF LSSLISQLES PNPKGKEDVI TGEEEEKEEE SADSSPSKGK SEGQRQLEES IEEIAKDIKK
101: VKKQNKITHV LLSATIILTL VWQLSEYSMI FMLKDRISHP VRSIGGMLNG MFKGKLRPIK NQLAGTSNSN DQNNHGNGSH TGPQLQVPEL LREFGFDDEE
101: VKKQNKITHV LLSATIILTL VWQLSEYSMI FMLKDRISHP VRSIGGMLNG MFKGKLRPIK NQLAGTSNSN DQNNHGNGSH TGPQLQVPEL LREFGFDDEE
Arabidopsis Description
F17L21.9 [Source:UniProtKB/TrEMBL;Acc:Q9FZK5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.