CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
plasma membrane 1
extracellular 1
mitochondrion 1
nucleus 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER96942
EES14314
OQU81760

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G57280.1	EER96942	AT4G26455.1	21798944
AT3G57280.1	EES14314	AT4G26455.1	21798944
AT3G57280.1	OQU81760	AT4G26455.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d021040_P001	Maize	golgi, peroxisome, plasma membrane	52.38	77.19
Zm00001d018927_P001	Maize	mitochondrion	70.24	66.79
Os06t0301100-01	Rice	plastid	55.56	59.07
TraesCS7B01G127500.2	Wheat	plastid	55.56	58.33
TraesCS7A01G219900.2	Wheat	plastid	55.56	58.09
TraesCS7D01G222200.2	Wheat	plastid	55.16	57.68
Solyc04g016440.2.1	Tomato	endoplasmic reticulum, peroxisome, plasma membrane, plastid	29.37	51.39
HORVU7Hr1G045420.1	Barley	cytosol, peroxisome	57.14	47.37
CDX88938	Canola	extracellular	22.22	45.53
EES12340	Sorghum	plastid	38.89	44.14
PGSC0003DMT400021095	Potato	cytosol, nucleus, plasma membrane	32.54	42.71
CDY30992	Canola	plastid	28.17	40.57
Solyc10g079260.1.1	Tomato	plastid	34.13	37.39
PGSC0003DMT400033126	Potato	plastid	32.94	36.4
Bra014634.1-P	Field mustard	extracellular	23.02	36.25
Bra007316.1-P	Field mustard	plastid	30.16	35.02
CDY06118	Canola	plastid	29.76	34.4
CDY33831	Canola	plastid	30.95	34.21
Zm00001d045615_P001	Maize	cytosol, endoplasmic reticulum, plastid	59.52	34.17
CDX67684	Canola	plastid	30.16	33.63
AT3G57280.1	Thale cress	plastid	29.76	33.19
CDX72054	Canola	plastid	28.97	32.88
KRH66851	Soybean	plastid	29.37	32.17
KRG95172	Soybean	mitochondrion	29.37	32.17
GSMUA_Achr9P12790_001	Banana	plastid	30.95	31.45
GSMUA_Achr3P04170_001	Banana	plastid	30.56	31.17
VIT_00s0252g00030.t01	Wine grape	plastid	27.38	30.13
GSMUA_Achr4P01650_001	Banana	mitochondrion	20.24	25.12
KXG36347	Sorghum	cytosol, plasma membrane, vacuole	13.89	22.29
KXG38150	Sorghum	extracellular, plasma membrane	10.32	20.16

Protein Annotations

EnsemblPlants:EER98049	EnsemblPlantsGene:SORBI_3002G050200	EntrezGene:8060724	Gene3D:1.20.58.1140	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	InterPro:TMEM14	PANTHER:PTHR12668	PANTHER:PTHR12668:SF18	PFAM:PF03647	ProteinID:EER98049
ProteinID:EER98049.1	RefSeq:XP_002461528.1	SEG:seg	TMHMM:TMhelix	unigene:Sbi.5214	UniParc:UPI0001A8423F
UniProt:C5XAF6	MapMan:5.8.3	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:-:4741856..4746914

Molecular Weight (calculated)

27032.4 Da

IEP (calculated)

10.051

GRAVY (calculated)

-0.112

Length

252 amino acids

Sequence
(BLAST)

001: MLRTHLPPEA WRRPLPQEAG GARDQSPRIS FHRAATRSRI PGGKLRCGGL EPRWLSSSRS SSSDSKPWTR MCTKADYTTP VDSVATSEQT GGETEATSEQ
101: TGGKTEEPAI VAPANEYTVQ EAAPQQKCAK IHDFCLGIPF GGFLFSMGLI GYLFWRSPAS LTFGVAPGLA ILALAVLSLN VWRSGKSSLP FILAQAGIAA
201: AVAWKHSQAY TTTRKLLPWG FYVALSAAMI CFYSYVVLAG GNPPPKKAKA AA

Best Arabidopsis Sequence Match ( AT3G57280.1 )
(BLAST)

001: MASQISQLAC FSSTNRQFHF QSRSFPCPMI RPQSFVVKSV DGNSSETPAS LSYTAEVSKP VVEKTSKPYS TVDETATNKE SITEPVEEDV ATQPIRAAKI
101: HDFCFGIPYG GLVVSGGLLG FAFSRNLTSL STGVLYGGGL LALSTLSLKI WREGKSSFPY ILGQAVLSAV VFWKNFTAYS MTKKLFPAGV FAVISACMLC
201: FYSYVVLSGG NPPPKKLKPS ATSPSY

Arabidopsis Description

FAX1Protein FATTY ACID EXPORT 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q93V66]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.