Factsheet for GSMUA_Achr4P01650_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
vacuole 1
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr3P04120_001
GSMUA_Achr4P01630_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G57280.1	GSMUA_Achr10P...	AT4G26455.1	21798944
AT3G57280.1	GSMUA_Achr3P04120_001	AT4G26455.1	21798944
AT3G57280.1	GSMUA_Achr4P01630_001	AT4G26455.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P04170_001	Banana	plastid	45.32	37.25
Zm00001d037138_P001	Maize	extracellular	14.78	37.04
GSMUA_Achr9P12790_001	Banana	plastid	41.38	33.87
Zm00001d036684_P001	Maize	plastid	15.27	31.96
Solyc04g016440.2.1	Tomato	endoplasmic reticulum, peroxisome, plasma membrane, plastid	22.66	31.94
PGSC0003DMT400021095	Potato	cytosol, nucleus, plasma membrane	28.08	29.69
CDX88938	Canola	extracellular	17.24	28.46
CDY30992	Canola	plastid	24.14	28.0
Zm00001d025663_P003	Maize	plastid	30.05	27.85
Solyc10g079260.1.1	Tomato	plastid	31.03	27.39
EES12340	Sorghum	plastid	29.56	27.03
Os04t0470300-01	Rice	plastid	29.56	26.91
TraesCS2D01G331600.1	Wheat	mitochondrion, plastid	28.08	25.79
Zm00001d021040_P001	Maize	golgi, peroxisome, plasma membrane	21.67	25.73
TraesCS7B01G127500.2	Wheat	plastid	30.05	25.42
CDX67684	Canola	plastid	28.08	25.22
KRG95172	Soybean	mitochondrion	28.57	25.22
CDY33831	Canola	plastid	28.08	25.0
PGSC0003DMT400033126	Potato	plastid	28.08	25.0
TraesCS2B01G350900.1	Wheat	plastid	28.57	24.89
KRH66851	Soybean	plastid	28.08	24.78
TraesCS7A01G219900.2	Wheat	plastid	29.06	24.48
TraesCS7D01G222200.2	Wheat	plastid	28.57	24.07
TraesCS2A01G331300.1	Wheat	plastid	27.59	24.03
Zm00001d035128_P001	Maize	extracellular	15.27	24.03
AT3G57280.1	Thale cress	plastid	26.6	23.89
CDX72054	Canola	plastid	25.62	23.42
Os06t0301100-01	Rice	plastid	26.6	22.78
VIT_00s0252g00030.t01	Wine grape	plastid	25.62	22.71
GSMUA_Achr6P29380_001	Banana	endoplasmic reticulum, extracellular	13.3	22.69
HORVU2Hr1G081780.5	Barley	plastid	27.59	22.58
CDY06118	Canola	plastid	24.14	22.48
GSMUA_Achr6P21760_001	Banana	endoplasmic reticulum, extracellular	12.81	21.85
Bra007316.1-P	Field mustard	plastid	23.15	21.66
Zm00001d031990_P001	Maize	extracellular	14.29	20.42
EER98049	Sorghum	plastid	25.12	20.24
Bra014634.1-P	Field mustard	extracellular	15.76	20.0
HORVU7Hr1G045420.1	Barley	cytosol, peroxisome	29.56	19.74
Zm00001d049001_P001	Maize	mitochondrion	19.21	19.6
Zm00001d018927_P001	Maize	mitochondrion	24.14	18.49
Zm00001d007235_P001	Maize	plasma membrane	14.78	13.22
Zm00001d045615_P001	Maize	cytosol, endoplasmic reticulum, plastid	23.15	10.71

Protein Annotations

EnsemblPlants:GSMUA_Achr4P01650_001	EnsemblPlants:GSMUA_Achr4T01650_001	EnsemblPlantsGene:GSMUA_Achr4G01650_001	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:TMEM14	PANTHER:PTHR12668	PANTHER:PTHR12668:SF18	SEG:seg	TMHMM:TMhelix	UniParc:UPI000294A6B7
UniProt:M0SK82	MapMan:5.8.3	:	:	:	:

Description

Putative expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr4G01650_001]

Coordinates

chr4:+:1385665..1388324

Molecular Weight (calculated)

22117.9 Da

IEP (calculated)

10.760

GRAVY (calculated)

0.093

Length

203 amino acids

Sequence
(BLAST)

001: MSTVQLYGSK LAARWSIQPR QGLRPSALWS RVSSDRVDLM GKYVRVPAIR VSNISGVSLC HKGSSSSSID ANTSMRRTQS KPDEAPTVEP VNGKMSMDIH
101: VQTEAVITIK RSAKIHDFCL GIPFGRFLFA GGLLGYIFSR NPTGMVSGGV ILALSFFSLK VWRTGRSSLP FISDQAATSA TLCLEFSADV LLGNKVPIRF
201: FID

Best Arabidopsis Sequence Match ( AT3G57280.1 )
(BLAST)

001: MASQISQLAC FSSTNRQFHF QSRSFPCPMI RPQSFVVKSV DGNSSETPAS LSYTAEVSKP VVEKTSKPYS TVDETATNKE SITEPVEEDV ATQPIRAAKI
101: HDFCFGIPYG GLVVSGGLLG FAFSRNLTSL STGVLYGGGL LALSTLSLKI WREGKSSFPY ILGQAVLSAV VFWKNFTAYS MTKKLFPAGV FAVISACMLC
201: FYSYVVLSGG NPPPKKLKPS ATSPSY

Arabidopsis Description

FAX1Protein FATTY ACID EXPORT 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q93V66]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.