Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 8
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G57280.1 | CDX89333 | AT4G26455.1 | 21798944 |
| AT3G57280.1 | CDX94330 | AT4G26455.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX88938 | Canola | extracellular | 55.43 | 78.86 |
| CDY06118 | Canola | plastid | 78.29 | 62.84 |
| CDX72054 | Canola | plastid | 78.29 | 61.71 |
| Solyc04g016440.2.1 | Tomato | endoplasmic reticulum, peroxisome, plasma membrane, plastid | 48.57 | 59.03 |
| CDY33831 | Canola | plastid | 75.43 | 57.89 |
| CDX67684 | Canola | plastid | 74.29 | 57.52 |
| AT3G57280.1 | Thale cress | plastid | 72.0 | 55.75 |
| PGSC0003DMT400021095 | Potato | cytosol, nucleus, plasma membrane | 52.0 | 47.4 |
| VIT_00s0252g00030.t01 | Wine grape | plastid | 58.86 | 44.98 |
| Solyc10g079260.1.1 | Tomato | plastid | 57.71 | 43.91 |
| PGSC0003DMT400033126 | Potato | plastid | 55.43 | 42.54 |
| KRG95172 | Soybean | mitochondrion | 52.0 | 39.57 |
| KRH66851 | Soybean | plastid | 51.43 | 39.13 |
| Zm00001d037138_P001 | Maize | extracellular | 17.14 | 37.04 |
| CDY65222 | Canola | endoplasmic reticulum, extracellular, vacuole | 24.57 | 36.13 |
| CDY69173 | Canola | plasma membrane | 25.14 | 35.77 |
| CDY19635 | Canola | extracellular, plasma membrane, vacuole | 24.0 | 35.29 |
| CDY71352 | Canola | endoplasmic reticulum, extracellular, vacuole | 24.0 | 35.29 |
| CDY25185 | Canola | extracellular, plasma membrane | 24.57 | 34.96 |
| TraesCS2D01G331600.1 | Wheat | mitochondrion, plastid | 44.0 | 34.84 |
| Zm00001d036684_P001 | Maize | plastid | 18.86 | 34.02 |
| Zm00001d025663_P003 | Maize | plastid | 42.29 | 33.79 |
| Os04t0470300-01 | Rice | plastid | 42.29 | 33.18 |
| EES12340 | Sorghum | plastid | 41.71 | 32.88 |
| TraesCS2A01G331300.1 | Wheat | plastid | 43.43 | 32.62 |
| GSMUA_Achr3P04170_001 | Banana | plastid | 45.71 | 32.39 |
| TraesCS2B01G350900.1 | Wheat | plastid | 42.86 | 32.19 |
| Zm00001d021040_P001 | Maize | golgi, peroxisome, plasma membrane | 30.86 | 31.58 |
| Os06t0301100-01 | Rice | plastid | 41.71 | 30.8 |
| GSMUA_Achr9P12790_001 | Banana | plastid | 42.86 | 30.24 |
| Zm00001d035128_P001 | Maize | extracellular | 22.29 | 30.23 |
| TraesCS7B01G127500.2 | Wheat | plastid | 40.57 | 29.58 |
| TraesCS7D01G222200.2 | Wheat | plastid | 40.57 | 29.46 |
| TraesCS7A01G219900.2 | Wheat | plastid | 40.0 | 29.05 |
| HORVU2Hr1G081780.5 | Barley | plastid | 40.57 | 28.63 |
| EER98049 | Sorghum | plastid | 40.57 | 28.17 |
| Zm00001d018927_P001 | Maize | mitochondrion | 41.14 | 27.17 |
| Zm00001d031990_P001 | Maize | extracellular | 20.57 | 25.35 |
| GSMUA_Achr4P01650_001 | Banana | mitochondrion | 28.0 | 24.14 |
| HORVU7Hr1G045420.1 | Barley | cytosol, peroxisome | 41.14 | 23.68 |
| Zm00001d049001_P001 | Maize | mitochondrion | 22.86 | 20.1 |
| Zm00001d007235_P001 | Maize | plasma membrane | 22.29 | 17.18 |
| CDX82243 | Canola | plasma membrane | 25.14 | 16.0 |
| Zm00001d045615_P001 | Maize | cytosol, endoplasmic reticulum, plastid | 32.57 | 12.98 |
Protein Annotations
| EnsemblPlants:CDY30992 | EnsemblPlantsGene:GSBRNA2T00047028001 | Gene3D:1.20.58.1140 | GO:A0A078H0J5 | GO:GO:0005575 | GO:GO:0016020 |
| GO:GO:0016021 | InterPro:TMEM14 | PANTHER:PTHR12668 | PANTHER:PTHR12668:SF18 | PFAM:PF03647 | ProteinID:CDY30992 |
| ProteinID:CDY30992.1 | SEG:seg | TMHMM:TMhelix | UniParc:UPI0004EE0A56 | UniProt:A0A078H0J5 | MapMan:5.8.3 |
Description
BnaC04g24320DBnaC04g24320D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H0J5]
Coordinates
chrLK032265:+:310697..312038
Molecular Weight (calculated)
19210.4 Da
IEP (calculated)
10.426
GRAVY (calculated)
0.136
Length
175 amino acids
Sequence
(BLAST)
(BLAST)
001: MSAKISQLAC FSSTTNRQFH FKTRSFPCPR FRPEPVEEHV VTQTKRAAKI HDFCFGIPYG GLVMYGGLLG FAFSRNPSSL STGVLYGGGL LALSTLSMKI
101: WRQGKSSFPY ILDQAVLSAV VFWKNFTAYS MTKKLFSAGL FSVVSAAMLC FYSYVVLSGG NPPPKKLKPS ASPSY
101: WRQGKSSFPY ILDQAVLSAV VFWKNFTAYS MTKKLFSAGL FSVVSAAMLC FYSYVVLSGG NPPPKKLKPS ASPSY
001: MASQISQLAC FSSTNRQFHF QSRSFPCPMI RPQSFVVKSV DGNSSETPAS LSYTAEVSKP VVEKTSKPYS TVDETATNKE SITEPVEEDV ATQPIRAAKI
101: HDFCFGIPYG GLVVSGGLLG FAFSRNLTSL STGVLYGGGL LALSTLSLKI WREGKSSFPY ILGQAVLSAV VFWKNFTAYS MTKKLFPAGV FAVISACMLC
201: FYSYVVLSGG NPPPKKLKPS ATSPSY
101: HDFCFGIPYG GLVVSGGLLG FAFSRNLTSL STGVLYGGGL LALSTLSLKI WREGKSSFPY ILGQAVLSAV VFWKNFTAYS MTKKLFPAGV FAVISACMLC
201: FYSYVVLSGG NPPPKKLKPS ATSPSY
Arabidopsis Description
FAX1Protein FATTY ACID EXPORT 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q93V66]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.