Factsheet for GSMUA_Achr3P04170_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 3
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr3P04120_001
GSMUA_Achr4P01630_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G57280.1	GSMUA_Achr10P...	AT4G26455.1	21798944
AT3G57280.1	GSMUA_Achr3P04120_001	AT4G26455.1	21798944
AT3G57280.1	GSMUA_Achr4P01630_001	AT4G26455.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P12790_001	Banana	plastid	70.04	69.76
Solyc04g016440.2.1	Tomato	endoplasmic reticulum, peroxisome, plasma membrane, plastid	33.2	56.94
CDX88938	Canola	extracellular	26.32	52.85
PGSC0003DMT400021095	Potato	cytosol, nucleus, plasma membrane	36.03	46.35
CDY30992	Canola	plastid	32.39	45.71
GSMUA_Achr4P01650_001	Banana	mitochondrion	37.25	45.32
Bra014634.1-P	Field mustard	extracellular	27.53	42.5
Zm00001d037138_P001	Maize	extracellular	13.36	40.74
TraesCS2D01G331600.1	Wheat	mitochondrion, plastid	36.03	40.27
AT3G57280.1	Thale cress	plastid	36.84	40.27
VIT_00s0252g00030.t01	Wine grape	plastid	37.25	40.17
Zm00001d025663_P003	Maize	plastid	35.22	39.73
EES12340	Sorghum	plastid	35.63	39.64
Solyc10g079260.1.1	Tomato	plastid	36.44	39.13
Os04t0470300-01	Rice	plastid	35.22	39.01
Bra007316.1-P	Field mustard	plastid	34.01	38.71
PGSC0003DMT400033126	Potato	plastid	35.63	38.6
CDY06118	Canola	plastid	34.01	38.53
TraesCS7B01G127500.2	Wheat	plastid	37.25	38.33
TraesCS2A01G331300.1	Wheat	plastid	36.03	38.2
CDY33831	Canola	plastid	35.22	38.16
CDX67684	Canola	plastid	34.82	38.05
CDX72054	Canola	plastid	34.01	37.84
KRG95172	Soybean	mitochondrion	35.22	37.83
TraesCS2B01G350900.1	Wheat	plastid	35.63	37.77
TraesCS7A01G219900.2	Wheat	plastid	36.84	37.76
TraesCS7D01G222200.2	Wheat	plastid	36.84	37.76
Os06t0301100-01	Rice	plastid	36.03	37.55
KRH66851	Soybean	plastid	34.41	36.96
Zm00001d021040_P001	Maize	golgi, peroxisome, plasma membrane	25.51	36.84
Zm00001d036684_P001	Maize	plastid	14.17	36.08
HORVU2Hr1G081780.5	Barley	plastid	32.39	32.26
GSMUA_Achr6P29380_001	Banana	endoplasmic reticulum, extracellular	15.38	31.93
Zm00001d035128_P001	Maize	extracellular	16.19	31.01
Zm00001d018927_P001	Maize	mitochondrion	33.2	30.94
EER98049	Sorghum	plastid	31.17	30.56
HORVU7Hr1G045420.1	Barley	cytosol, peroxisome	37.25	30.26
GSMUA_Achr6P21760_001	Banana	endoplasmic reticulum, extracellular	14.17	29.41
Zm00001d031990_P001	Maize	extracellular	15.38	26.76
Zm00001d049001_P001	Maize	mitochondrion	16.6	20.6
Zm00001d007235_P001	Maize	plasma membrane	16.6	18.06
Zm00001d045615_P001	Maize	cytosol, endoplasmic reticulum, plastid	27.13	15.26

Protein Annotations

EnsemblPlants:GSMUA_Achr3P04170_001	EnsemblPlants:GSMUA_Achr3T04170_001	EnsemblPlantsGene:GSMUA_Achr3G04170_001	Gene3D:1.20.58.1140	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	InterPro:TMEM14	PANTHER:PTHR12668	PANTHER:PTHR12668:SF18	PFAM:PF03647	SEG:seg
TMHMM:TMhelix	UniParc:UPI000295295D	UniProt:M0SBN5	MapMan:5.8.3	:	:

Description

Putative expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr3G04170_001]

Coordinates

chr3:+:2651866..2655618

Molecular Weight (calculated)

26507.4 Da

IEP (calculated)

10.489

GRAVY (calculated)

0.169

Length

247 amino acids

Sequence
(BLAST)

001: MAVSQLYGSG LAAKWSMRSL EGLRPLPLWP RVASSGSPDL KSNYFKVPAI RVSNISGRKL TVSMGLNGSS PRSSIVANAA TRYAEDKPDQ ADEPLKTNPT
101: VKSINEKLDM DAHVQEEAVV PTKRSAKIHD FCFGIPFGGL LFAGGLLGFI FSRNATAMIY GGAILALSVL SLKVWRTGRS SLPFILGQAA FSAALLWKLL
201: QAYSLSKKVF PTGLYIFFSA AMICFYSYVL ISGGNPPPKK LAAAPPS

Best Arabidopsis Sequence Match ( AT3G57280.1 )
(BLAST)

001: MASQISQLAC FSSTNRQFHF QSRSFPCPMI RPQSFVVKSV DGNSSETPAS LSYTAEVSKP VVEKTSKPYS TVDETATNKE SITEPVEEDV ATQPIRAAKI
101: HDFCFGIPYG GLVVSGGLLG FAFSRNLTSL STGVLYGGGL LALSTLSLKI WREGKSSFPY ILGQAVLSAV VFWKNFTAYS MTKKLFPAGV FAVISACMLC
201: FYSYVVLSGG NPPPKKLKPS ATSPSY

Arabidopsis Description

FAX1Protein FATTY ACID EXPORT 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q93V66]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.