CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
nucleus 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER96942
EES14314
OQU81760

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G57280.1	EER96942	AT4G26455.1	21798944
AT3G57280.1	EES14314	AT4G26455.1	21798944
AT3G57280.1	OQU81760	AT4G26455.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d025663_P003	Maize	plastid	93.24	94.52
TraesCS2D01G331600.1	Wheat	mitochondrion, plastid	72.52	72.85
TraesCS2A01G331300.1	Wheat	plastid	73.42	69.96
Os04t0470300-01	Rice	plastid	69.82	69.51
TraesCS2B01G350900.1	Wheat	plastid	72.07	68.67
Zm00001d037138_P001	Maize	extracellular	22.52	61.73
Zm00001d035128_P001	Maize	extracellular	35.14	60.47
HORVU2Hr1G081780.5	Barley	plastid	67.12	60.08
Zm00001d031990_P001	Maize	extracellular	35.14	54.93
Zm00001d036684_P001	Maize	plastid	23.87	54.64
CDX88938	Canola	extracellular	24.77	44.72
Solyc04g016440.2.1	Tomato	endoplasmic reticulum, peroxisome, plasma membrane, plastid	27.93	43.06
CDY30992	Canola	plastid	32.88	41.71
EER98049	Sorghum	plastid	44.14	38.89
PGSC0003DMT400021095	Potato	cytosol, nucleus, plasma membrane	32.88	38.02
Zm00001d007235_P001	Maize	plasma membrane	37.39	36.56
GSMUA_Achr3P04170_001	Banana	plastid	39.64	35.63
Bra007316.1-P	Field mustard	plastid	34.68	35.48
CDX72054	Canola	plastid	35.14	35.14
GSMUA_Achr9P12790_001	Banana	plastid	39.19	35.08
Bra014634.1-P	Field mustard	extracellular	25.23	35.0
CDY06118	Canola	plastid	34.23	34.86
Zm00001d049001_P001	Maize	mitochondrion	31.08	34.67
AT3G57280.1	Thale cress	plastid	34.68	34.07
Solyc10g079260.1.1	Tomato	plastid	34.68	33.48
CDY33831	Canola	plastid	34.23	33.33
CDX67684	Canola	plastid	33.78	33.19
PGSC0003DMT400033126	Potato	plastid	31.98	31.14
VIT_00s0252g00030.t01	Wine grape	plastid	31.53	30.57
KRH66851	Soybean	plastid	31.53	30.43
KRG95172	Soybean	mitochondrion	31.53	30.43
GSMUA_Achr4P01650_001	Banana	mitochondrion	27.03	29.56
KXG38150	Sorghum	extracellular, plasma membrane	14.86	25.58
KXG36347	Sorghum	cytosol, plasma membrane, vacuole	16.22	22.93

Protein Annotations

EnsemblPlants:EES12340	EnsemblPlantsGene:SORBI_3006G115100	EntrezGene:8058686	Gene3D:1.20.58.1140	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	InterPro:TMEM14	PANTHER:PTHR12668	PANTHER:PTHR12668:SF16	PFAM:PF03647	ProteinID:EES12340
ProteinID:EES12340.1	RefSeq:XP_002448012.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI0001A870A5	UniProt:C5YAB2
MapMan:5.8.3	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr6:-:48283385..48285872

Molecular Weight (calculated)

23964.4 Da

IEP (calculated)

10.286

GRAVY (calculated)

0.300

Length

222 amino acids

Sequence
(BLAST)

001: MAAAAQLHGS AAATAACRRT RAYSVRSSCR WPQSLLAGSP KLSISTSGVC TKPFGFAAKF STKCANENAR VEELDLQSDK MKELHVEEHV IPQKRSAKIH
101: DFCLGIPFGG LLFSMGLLGY IFSRSTISLV LGIAPGLATL LLGILSLKFW RSGRSSFLLI LAQAAISAFL AWKYSHAYFL TNRLLPWGFY ASLSTAMGCF
201: YAYVLLAGGN PPPKKLAAIP PQ

Best Arabidopsis Sequence Match ( AT3G57280.1 )
(BLAST)

001: MASQISQLAC FSSTNRQFHF QSRSFPCPMI RPQSFVVKSV DGNSSETPAS LSYTAEVSKP VVEKTSKPYS TVDETATNKE SITEPVEEDV ATQPIRAAKI
101: HDFCFGIPYG GLVVSGGLLG FAFSRNLTSL STGVLYGGGL LALSTLSLKI WREGKSSFPY ILGQAVLSAV VFWKNFTAYS MTKKLFPAGV FAVISACMLC
201: FYSYVVLSGG NPPPKKLKPS ATSPSY

Arabidopsis Description

FAX1Protein FATTY ACID EXPORT 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q93V66]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.