Factsheet for Bra007316.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra026434.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G57280.1	Bra026434.1-P	AT4G26455.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY06118	Canola	plastid	94.01	93.58
CDX72054	Canola	plastid	80.18	78.38
Bra014634.1-P	Field mustard	extracellular	50.23	68.12
Solyc04g016440.2.1	Tomato	endoplasmic reticulum, peroxisome, plasma membrane, plastid	41.47	62.5
AT3G57280.1	Thale cress	plastid	61.75	59.29
PGSC0003DMT400033126	Potato	plastid	51.15	48.68
VIT_00s0252g00030.t01	Wine grape	plastid	51.15	48.47
PGSC0003DMT400021095	Potato	cytosol, nucleus, plasma membrane	42.86	48.44
Solyc10g079260.1.1	Tomato	plastid	47.93	45.22
KRH66851	Soybean	plastid	47.93	45.22
KRG95172	Soybean	mitochondrion	47.47	44.78
Zm00001d037138_P001	Maize	extracellular	14.29	38.27
TraesCS2D01G331600.1	Wheat	mitochondrion, plastid	37.79	37.1
Zm00001d021040_P001	Maize	golgi, peroxisome, plasma membrane	28.57	36.26
Zm00001d025663_P003	Maize	plastid	36.41	36.07
Os04t0470300-01	Rice	plastid	36.87	35.87
Bra018873.1-P	Field mustard	extracellular, plasma membrane	20.28	35.77
Zm00001d036684_P001	Maize	plastid	15.67	35.05
TraesCS2A01G331300.1	Wheat	plastid	37.33	34.76
EES12340	Sorghum	plastid	35.48	34.68
Os06t0301100-01	Rice	plastid	37.33	34.18
GSMUA_Achr3P04170_001	Banana	plastid	38.71	34.01
TraesCS2B01G350900.1	Wheat	plastid	35.94	33.48
TraesCS7B01G127500.2	Wheat	plastid	36.87	33.33
TraesCS7D01G222200.2	Wheat	plastid	36.87	33.2
TraesCS7A01G219900.2	Wheat	plastid	36.41	32.78
GSMUA_Achr9P12790_001	Banana	plastid	36.41	31.85
HORVU2Hr1G081780.5	Barley	plastid	35.48	31.05
Zm00001d035128_P001	Maize	extracellular	18.43	31.01
Zm00001d018927_P001	Maize	mitochondrion	37.33	30.57
EER98049	Sorghum	plastid	35.02	30.16
Zm00001d031990_P001	Maize	extracellular	17.97	27.46
HORVU7Hr1G045420.1	Barley	cytosol, peroxisome	37.33	26.64
GSMUA_Achr4P01650_001	Banana	mitochondrion	21.66	23.15
Zm00001d049001_P001	Maize	mitochondrion	19.35	21.11
Zm00001d007235_P001	Maize	plasma membrane	18.89	18.06
Zm00001d045615_P001	Maize	cytosol, endoplasmic reticulum, plastid	29.49	14.58

Protein Annotations

EnsemblPlants:Bra007316.1	EnsemblPlants:Bra007316.1-P	EnsemblPlantsGene:Bra007316	Gene3D:1.20.58.1140	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	InterPro:TMEM14	PANTHER:PTHR12668	PANTHER:PTHR12668:SF18	PFAM:PF03647	TMHMM:TMhelix
UniParc:UPI0002542C8B	UniProt:M4CSX4	MapMan:5.8.3	:	:	:

Description

AT3G57280 (E=2e-098) | unknown protein

Coordinates

chrA09:+:28547492..28548860

Molecular Weight (calculated)

23433.2 Da

IEP (calculated)

10.179

GRAVY (calculated)

-0.000

Length

217 amino acids

Sequence
(BLAST)

001: MAAKISQLAC FSSTNRQFNF QNRSFPNLRL RPESFVVRCV DGNSSETPAS LSYAAEVSKP FVEKTSTVDE TTTGKEEHVG STQPKRAAKI HDFCFGIPYG
101: GLVMSGGLLG FAFSRNHTSL STGVLYGGGL LALSTLSMKT WRQGKSSFPY ILGQAVLSAV VFWKNFTAYS MTKKLFPAGL FAVVSAAMLC FYSYVVLSGG
201: NPPPKKLKPS ATTSPSY

Best Arabidopsis Sequence Match ( AT3G57280.1 )
(BLAST)

001: MASQISQLAC FSSTNRQFHF QSRSFPCPMI RPQSFVVKSV DGNSSETPAS LSYTAEVSKP VVEKTSKPYS TVDETATNKE SITEPVEEDV ATQPIRAAKI
101: HDFCFGIPYG GLVVSGGLLG FAFSRNLTSL STGVLYGGGL LALSTLSLKI WREGKSSFPY ILGQAVLSAV VFWKNFTAYS MTKKLFPAGV FAVISACMLC
201: FYSYVVLSGG NPPPKKLKPS ATSPSY

Arabidopsis Description

FAX1Protein FATTY ACID EXPORT 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q93V66]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.