Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- extracellular 1
- golgi 1
- plasma membrane 2
- endoplasmic reticulum 1
- vacuole 1
- plastid 4
- cytosol 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os04t0471300-01 | |
| Os08t0497900-01 | |
| Os09t0481300-01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G57280.1 | Os04t0471300-01 | AT4G26455.1 | 21798944 |
| AT3G57280.1 | Os08t0497900-01 | AT4G26455.1 | 21798944 |
| AT3G57280.1 | Os09t0481300-01 | AT4G26455.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G331600.1 | Wheat | mitochondrion, plastid | 72.65 | 73.3 |
| Zm00001d025663_P003 | Maize | plastid | 69.96 | 71.23 |
| EES12340 | Sorghum | plastid | 69.51 | 69.82 |
| TraesCS2A01G331300.1 | Wheat | plastid | 72.65 | 69.53 |
| TraesCS2B01G350900.1 | Wheat | plastid | 71.3 | 68.24 |
| HORVU2Hr1G081780.5 | Barley | plastid | 66.82 | 60.08 |
| Zm00001d037138_P001 | Maize | extracellular | 20.63 | 56.79 |
| Zm00001d035128_P001 | Maize | extracellular | 30.94 | 53.49 |
| Zm00001d036684_P001 | Maize | plastid | 22.42 | 51.55 |
| Zm00001d031990_P001 | Maize | extracellular | 30.49 | 47.89 |
| Solyc04g016440.2.1 | Tomato | endoplasmic reticulum, peroxisome, plasma membrane, plastid | 30.04 | 46.53 |
| CDX88938 | Canola | extracellular | 25.56 | 46.34 |
| CDY30992 | Canola | plastid | 33.18 | 42.29 |
| Os06t0301100-01 | Rice | plastid | 44.84 | 42.19 |
| PGSC0003DMT400021095 | Potato | cytosol, nucleus, plasma membrane | 34.08 | 39.58 |
| AT3G57280.1 | Thale cress | plastid | 38.12 | 37.61 |
| CDX72054 | Canola | plastid | 37.22 | 37.39 |
| Bra007316.1-P | Field mustard | plastid | 35.87 | 36.87 |
| CDY33831 | Canola | plastid | 37.67 | 36.84 |
| Bra014634.1-P | Field mustard | extracellular | 26.01 | 36.25 |
| CDY06118 | Canola | plastid | 35.43 | 36.24 |
| CDX67684 | Canola | plastid | 35.87 | 35.4 |
| GSMUA_Achr3P04170_001 | Banana | plastid | 39.01 | 35.22 |
| GSMUA_Achr9P12790_001 | Banana | plastid | 38.12 | 34.27 |
| KRH66851 | Soybean | plastid | 34.53 | 33.48 |
| Solyc10g079260.1.1 | Tomato | plastid | 34.53 | 33.48 |
| KRG95172 | Soybean | mitochondrion | 34.08 | 33.04 |
| VIT_00s0252g00030.t01 | Wine grape | plastid | 33.18 | 32.31 |
| PGSC0003DMT400033126 | Potato | plastid | 32.74 | 32.02 |
| Zm00001d007235_P001 | Maize | plasma membrane | 31.84 | 31.28 |
| Zm00001d049001_P001 | Maize | mitochondrion | 27.8 | 31.16 |
| Os03t0568500-01 | Rice | endoplasmic reticulum, extracellular | 16.14 | 30.25 |
| GSMUA_Achr4P01650_001 | Banana | mitochondrion | 26.91 | 29.56 |
Protein Annotations
| Gene3D:1.20.58.1140 | EntrezGene:4336119 | MapMan:5.8.3 | EMBL:AK059742 | EMBL:AK070483 | ProteinID:BAF14964.1 |
| ProteinID:BAS89636.1 | ProteinID:CAE03049.2 | ProteinID:EEE61164.1 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| EnsemblPlantsGene:Os04g0470300 | EnsemblPlants:Os04t0470300-01 | PFAM:PF03647 | PANTHER:PTHR12668 | PANTHER:PTHR12668:SF16 | UniProt:Q7XQN3 |
| InterPro:TMEM14 | TMHMM:TMhelix | UniParc:UPI000021C620 | RefSeq:XP_015635421.1 | SEG:seg | : |
Description
Uncharacterised protein family UPF0136, Transmembrane domain containing protein. (Os04t0470300-01);Uncharacterised protein family UPF0136, Transmembrane domain containing protein. (Os04t0470300-02)
Coordinates
chr4:-:23500031..23502611
Molecular Weight (calculated)
23839.2 Da
IEP (calculated)
10.077
GRAVY (calculated)
0.329
Length
223 amino acids
Sequence
(BLAST)
(BLAST)
001: MALAAQLYGS AAAAAYRRLP LYGVPSSCRW PRTPLAALPK LSISTGGMGM NPFGVGAKVS IKCTNGTTQV DELNFRSNQT EELVEGDADT VTQKRSAKIH
101: DFCLGIPFGG LLFCMGLLGY IFSRSTISLV LGVAPGLTTL FLGTLSLKFW RSGKSSFIFI LGQAAISAVL AWKYSHAYIL TNRILPWAFY ASLSTAMACF
201: YAYVLLSGGN PPPKKKMAAT PSS
101: DFCLGIPFGG LLFCMGLLGY IFSRSTISLV LGVAPGLTTL FLGTLSLKFW RSGKSSFIFI LGQAAISAVL AWKYSHAYIL TNRILPWAFY ASLSTAMACF
201: YAYVLLSGGN PPPKKKMAAT PSS
001: MASQISQLAC FSSTNRQFHF QSRSFPCPMI RPQSFVVKSV DGNSSETPAS LSYTAEVSKP VVEKTSKPYS TVDETATNKE SITEPVEEDV ATQPIRAAKI
101: HDFCFGIPYG GLVVSGGLLG FAFSRNLTSL STGVLYGGGL LALSTLSLKI WREGKSSFPY ILGQAVLSAV VFWKNFTAYS MTKKLFPAGV FAVISACMLC
201: FYSYVVLSGG NPPPKKLKPS ATSPSY
101: HDFCFGIPYG GLVVSGGLLG FAFSRNLTSL STGVLYGGGL LALSTLSLKI WREGKSSFPY ILGQAVLSAV VFWKNFTAYS MTKKLFPAGV FAVISACMLC
201: FYSYVVLSGG NPPPKKLKPS ATSPSY
Arabidopsis Description
FAX1Protein FATTY ACID EXPORT 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q93V66]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.