CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX89333
CDX94330

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G57280.1	CDX89333	AT4G26455.1	21798944
AT3G57280.1	CDX94330	AT4G26455.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY33831	Canola	plastid	85.4	84.65
CDX88938	Canola	extracellular	43.36	79.67
CDY30992	Canola	plastid	57.52	74.29
CDY06118	Canola	plastid	65.93	68.35
AT3G57280.1	Thale cress	plastid	67.7	67.7
CDX72054	Canola	plastid	65.04	66.22
Solyc04g016440.2.1	Tomato	endoplasmic reticulum, peroxisome, plasma membrane, plastid	38.94	61.11
PGSC0003DMT400021095	Potato	cytosol, nucleus, plasma membrane	46.9	55.21
Solyc10g079260.1.1	Tomato	plastid	51.77	50.87
VIT_00s0252g00030.t01	Wine grape	plastid	49.56	48.91
KRH66851	Soybean	plastid	46.46	45.65
KRG95172	Soybean	mitochondrion	46.46	45.65
PGSC0003DMT400033126	Potato	plastid	45.13	44.74
Zm00001d037138_P001	Maize	extracellular	14.16	39.51
CDY65222	Canola	endoplasmic reticulum, extracellular, vacuole	20.35	38.66
TraesCS2D01G331600.1	Wheat	mitochondrion, plastid	37.17	38.01
CDY71352	Canola	endoplasmic reticulum, extracellular, vacuole	19.91	37.82
CDY19635	Canola	extracellular, plasma membrane, vacuole	19.91	37.82
Zm00001d021040_P001	Maize	golgi, peroxisome, plasma membrane	27.43	36.26
Zm00001d036684_P001	Maize	plastid	15.49	36.08
Os04t0470300-01	Rice	plastid	35.4	35.87
CDY69173	Canola	plasma membrane	19.47	35.77
TraesCS2A01G331300.1	Wheat	plastid	36.28	35.19
CDY25185	Canola	extracellular, plasma membrane	19.03	34.96
GSMUA_Achr3P04170_001	Banana	plastid	38.05	34.82
Zm00001d025663_P003	Maize	plastid	33.63	34.7
TraesCS2B01G350900.1	Wheat	plastid	35.4	34.33
EES12340	Sorghum	plastid	33.19	33.78
Os06t0301100-01	Rice	plastid	34.51	32.91
TraesCS7B01G127500.2	Wheat	plastid	34.51	32.5
TraesCS7D01G222200.2	Wheat	plastid	34.51	32.37
TraesCS7A01G219900.2	Wheat	plastid	34.07	31.95
GSMUA_Achr9P12790_001	Banana	plastid	34.96	31.85
HORVU2Hr1G081780.5	Barley	plastid	34.07	31.05
Zm00001d035128_P001	Maize	extracellular	17.26	30.23
Zm00001d018927_P001	Maize	mitochondrion	35.4	30.19
EER98049	Sorghum	plastid	33.63	30.16
GSMUA_Achr4P01650_001	Banana	mitochondrion	25.22	28.08
Zm00001d031990_P001	Maize	extracellular	17.26	27.46
HORVU7Hr1G045420.1	Barley	cytosol, peroxisome	35.84	26.64
Zm00001d049001_P001	Maize	mitochondrion	21.24	24.12
Zm00001d007235_P001	Maize	plasma membrane	18.58	18.5
CDX82243	Canola	plasma membrane	20.8	17.09
Zm00001d045615_P001	Maize	cytosol, endoplasmic reticulum, plastid	27.43	14.12

Protein Annotations

EnsemblPlants:CDX67684	EnsemblPlantsGene:GSBRNA2T00098857001	Gene3D:1.20.58.1140	GO:A0A078BVF5	GO:GO:0005575	GO:GO:0016020
InterPro:TMEM14	PANTHER:PTHR12668	PANTHER:PTHR12668:SF18	PFAM:PF03647	ProteinID:CDX67684	ProteinID:CDX67684.1
SEG:seg	TMHMM:TMhelix	UniParc:UPI0004EDD39E	MapMan:5.8.3	:	:

Description

BnaA07g17240D

Coordinates

chrLK031787:+:1732950..1734359

Molecular Weight (calculated)

24600.8 Da

IEP (calculated)

10.237

GRAVY (calculated)

0.078

Length

226 amino acids

Sequence
(BLAST)

001: MATKISHLAC LSTTNRQLRF QTRSFPCLRS RHVCFVVRSV DGNSSETPAS LSYTAEVSKP FFEKTSKKPY SSVDETATSK EIITETVEEH VATQPKRAAK
101: IHDFCFGIPY GGLVMSGGLL GFAFSRNLTS LSTGVLYGGG LLALSTLSLK IWRQGKSSFP YILGQAVLSA VVFWKNFTAY SMTKKLFPAG IFAVVSAVML
201: CFYSYVVLSG GNPPPKKLKP STSPSH

Best Arabidopsis Sequence Match ( AT3G57280.1 )
(BLAST)

001: MASQISQLAC FSSTNRQFHF QSRSFPCPMI RPQSFVVKSV DGNSSETPAS LSYTAEVSKP VVEKTSKPYS TVDETATNKE SITEPVEEDV ATQPIRAAKI
101: HDFCFGIPYG GLVVSGGLLG FAFSRNLTSL STGVLYGGGL LALSTLSLKI WREGKSSFPY ILGQAVLSAV VFWKNFTAYS MTKKLFPAGV FAVISACMLC
201: FYSYVVLSGG NPPPKKLKPS ATSPSY

Arabidopsis Description

FAX1Protein FATTY ACID EXPORT 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q93V66]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.