Subcellular Localization
min:
: max
Winner_takes_all: extracellular, endoplasmic reticulum, vacuole
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 1
- endoplasmic reticulum 3
- extracellular 3
- golgi 2
- plasma membrane 2
- vacuole 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G20510.1 | CDX70995 | AT5G22290.1 | 21798944 |
| AT3G20510.1 | CDX88803 | AT5G22290.1 | 21798944 |
| AT3G20510.1 | CDX92368 | AT5G22290.1 | 21798944 |
| AT3G20510.1 | CDY09128 | AT5G22290.1 | 21798944 |
| AT3G20510.1 | CDY35676 | AT5G22290.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY65222 | Canola | endoplasmic reticulum, extracellular, vacuole | 97.48 | 97.48 |
| CDY19635 | Canola | extracellular, plasma membrane, vacuole | 92.44 | 92.44 |
| AT3G20510.1 | Thale cress | endoplasmic reticulum, extracellular, vacuole | 89.92 | 89.92 |
| CDY69173 | Canola | plasma membrane | 75.63 | 73.17 |
| CDY25185 | Canola | extracellular, plasma membrane | 75.63 | 73.17 |
| KRH14426 | Soybean | endoplasmic reticulum, extracellular | 68.07 | 68.07 |
| PGSC0003DMT400057207 | Potato | endoplasmic reticulum, extracellular | 50.42 | 64.52 |
| Solyc10g006310.2.1 | Tomato | endoplasmic reticulum, extracellular | 63.87 | 63.87 |
| Solyc07g064470.2.1 | Tomato | endoplasmic reticulum, extracellular | 63.03 | 63.03 |
| PGSC0003DMT400037293 | Potato | endoplasmic reticulum, extracellular | 62.18 | 62.18 |
| GSMUA_Achr6P21760_001 | Banana | endoplasmic reticulum, extracellular | 62.18 | 62.18 |
| VIT_19s0090g00200.t01 | Wine grape | extracellular, golgi, vacuole | 56.3 | 61.47 |
| Os03t0568500-01 | Rice | endoplasmic reticulum, extracellular | 61.34 | 61.34 |
| GSMUA_Achr6P29380_001 | Banana | endoplasmic reticulum, extracellular | 60.5 | 60.5 |
| TraesCS7A01G190000.1 | Wheat | endoplasmic reticulum, extracellular, plasma membrane | 60.5 | 60.5 |
| TraesCS7D01G191200.1 | Wheat | endoplasmic reticulum, extracellular, plasma membrane | 60.5 | 60.5 |
| TraesCS7B01G095100.1 | Wheat | endoplasmic reticulum, extracellular, plasma membrane | 58.82 | 58.82 |
| Zm00001d013817_P001 | Maize | endoplasmic reticulum, extracellular, vacuole | 58.82 | 58.33 |
| KXG36347 | Sorghum | cytosol, plasma membrane, vacuole | 52.1 | 39.49 |
| CDX82243 | Canola | plasma membrane | 89.08 | 38.55 |
| HORVU2Hr1G046220.7 | Barley | extracellular, golgi | 45.38 | 38.03 |
| Zm00001d033054_P001 | Maize | mitochondrion | 58.82 | 36.08 |
| KXG38150 | Sorghum | extracellular, plasma membrane | 37.82 | 34.88 |
| CDX88938 | Canola | extracellular | 32.77 | 31.71 |
| CDY30992 | Canola | plastid | 35.29 | 24.0 |
| CDY06118 | Canola | plastid | 37.82 | 20.64 |
| CDX72054 | Canola | plastid | 37.82 | 20.27 |
| CDX67684 | Canola | plastid | 37.82 | 19.91 |
| CDY33831 | Canola | plastid | 37.82 | 19.74 |
Protein Annotations
| EnsemblPlants:CDY71352 | EnsemblPlantsGene:GSBRNA2T00014357001 | Gene3D:1.20.58.1140 | GO:A0A078K0C8 | GO:GO:0005575 | GO:GO:0016020 |
| GO:GO:0016021 | InterPro:TMEM14 | PANTHER:PTHR12668 | PANTHER:PTHR12668:SF0 | PFAM:PF03647 | ProteinID:CDY71352 |
| ProteinID:CDY71352.1 | SEG:seg | TMHMM:TMhelix | UniParc:UPI0004EDF269 | UniProt:A0A078K0C8 | MapMan:5.8.3 |
| MapMan:24.2.22 | : | : | : | : | : |
Description
BnaAnng37060DBnaAnng37060D protein [Source:UniProtKB/TrEMBL;Acc:A0A078K0C8]
Coordinates
chrLK045477:-:604..2124
Molecular Weight (calculated)
12552.9 Da
IEP (calculated)
10.159
GRAVY (calculated)
0.722
Length
119 amino acids
Sequence
(BLAST)
(BLAST)
001: MHDFCFTIPY GMLLIGGGFI GYMKKGSITS FAGGAVAGLL LILAGYLSLK AFEKKKNSSI AVVLQTVISA ALTLVMGQRY LLTQKVMPAG LVAGISALMT
101: CFYVYKIATG GNKISSKTE
101: CFYVYKIATG GNKISSKTE
001: MHDFCFTIPY GMLLIGGGFI GYMKKGSITS FAGGAGTGLL LILAGYISLK AFEKKKNSTI AMVLQTVIAA ALTLVMGQRY LLTGKIMPAG LVAGISALMT
101: CFYVYKIATG GNKFPAKAE
101: CFYVYKIATG GNKFPAKAE
Arabidopsis Description
FAX6Protein FATTY ACID EXPORT 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9LJU6]
SUBAcon: [extracellular,endoplasmic reticulum,vacuole]
SUBAcon: [extracellular,endoplasmic reticulum,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.