Subcellular Localization
min:
: max
Winner_takes_all: golgi, extracellular, vacuole
Predictor Summary:
Predictor Summary:
- nucleus 1
- extracellular 5
- endoplasmic reticulum 4
- vacuole 6
- plasma membrane 5
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_06s0080g00970.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G20510.1 | VIT_06s0080g00970.t01 | AT5G22290.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400057207 | Potato | endoplasmic reticulum, extracellular | 69.72 | 81.72 |
| PGSC0003DMT400037293 | Potato | endoplasmic reticulum, extracellular | 77.06 | 70.59 |
| Solyc10g006310.2.1 | Tomato | endoplasmic reticulum, extracellular | 76.15 | 69.75 |
| Solyc07g064470.2.1 | Tomato | endoplasmic reticulum, extracellular | 72.48 | 66.39 |
| KRH14426 | Soybean | endoplasmic reticulum, extracellular | 69.72 | 63.87 |
| AT3G20510.1 | Thale cress | endoplasmic reticulum, extracellular, vacuole | 64.22 | 58.82 |
| GSMUA_Achr6P21760_001 | Banana | endoplasmic reticulum, extracellular | 63.3 | 57.98 |
| CDY19635 | Canola | extracellular, plasma membrane, vacuole | 62.39 | 57.14 |
| GSMUA_Achr6P29380_001 | Banana | endoplasmic reticulum, extracellular | 62.39 | 57.14 |
| AT1G50740.1 | Thale cress | endoplasmic reticulum, extracellular, vacuole | 62.39 | 57.14 |
| CDY71352 | Canola | endoplasmic reticulum, extracellular, vacuole | 61.47 | 56.3 |
| TraesCS7D01G191200.1 | Wheat | endoplasmic reticulum, extracellular, plasma membrane | 60.55 | 55.46 |
| TraesCS7B01G095100.1 | Wheat | endoplasmic reticulum, extracellular, plasma membrane | 60.55 | 55.46 |
| TraesCS7A01G190000.1 | Wheat | endoplasmic reticulum, extracellular, plasma membrane | 60.55 | 55.46 |
| Os03t0568500-01 | Rice | endoplasmic reticulum, extracellular | 60.55 | 55.46 |
| CDY65222 | Canola | endoplasmic reticulum, extracellular, vacuole | 60.55 | 55.46 |
| Zm00001d013817_P001 | Maize | endoplasmic reticulum, extracellular, vacuole | 58.72 | 53.33 |
| CDY25185 | Canola | extracellular, plasma membrane | 58.72 | 52.03 |
| Bra018873.1-P | Field mustard | extracellular, plasma membrane | 58.72 | 52.03 |
| CDY69173 | Canola | plasma membrane | 57.8 | 51.22 |
| HORVU2Hr1G046220.7 | Barley | extracellular, golgi | 53.21 | 40.85 |
| KXG38150 | Sorghum | extracellular, plasma membrane | 40.37 | 34.11 |
| KXG36347 | Sorghum | cytosol, plasma membrane, vacuole | 48.62 | 33.76 |
| Zm00001d033054_P001 | Maize | mitochondrion | 59.63 | 33.51 |
| CDX82243 | Canola | plasma membrane | 62.39 | 24.73 |
| VIT_00s0252g00030.t01 | Wine grape | plastid | 33.03 | 15.72 |
Protein Annotations
| ArrayExpress:VIT_19s0090g00200 | EMBL:FN595751 | EnsemblPlants:VIT_19s0090g00200.t01 | EnsemblPlantsGene:VIT_19s0090g00200 | Gene3D:1.20.58.1140 | GO:GO:0005575 |
| GO:GO:0016020 | GO:GO:0016021 | InterPro:TMEM14 | PANTHER:PTHR12668 | PANTHER:PTHR12668:SF14 | PFAM:PF03647 |
| ProteinID:CCB50646 | ProteinID:CCB50646.1 | SEG:seg | TMHMM:TMhelix | UniParc:UPI00021098A7 | UniProt:F6HEP1 |
| MapMan:5.8.3 | MapMan:24.2.22 | : | : | : | : |
Description
No Description!
Coordinates
chr19:-:6338371..6341252
Molecular Weight (calculated)
11417.3 Da
IEP (calculated)
10.461
GRAVY (calculated)
0.497
Length
109 amino acids
Sequence
(BLAST)
(BLAST)
001: MHDFCFTIPY GLVLVGGGIV GYAKKGSLAS LGGGLGTGFV LILAGYLSLK AFKKKKNSYL ALILETVCAA ALTWVMGQRY MQTSKIMPAG IVAGIRVQNR
101: LRGDSSGAS
101: LRGDSSGAS
001: MHDFCFTIPY GMLLIGGGFI GYMKKGSITS FAGGAGTGLL LILAGYISLK AFEKKKNSTI AMVLQTVIAA ALTLVMGQRY LLTGKIMPAG LVAGISALMT
101: CFYVYKIATG GNKFPAKAE
101: CFYVYKIATG GNKFPAKAE
Arabidopsis Description
FAX6Protein FATTY ACID EXPORT 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9LJU6]
SUBAcon: [endoplasmic reticulum,extracellular,vacuole]
SUBAcon: [endoplasmic reticulum,extracellular,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.