Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular
Predictor Summary:
Predictor Summary:
- nucleus 1
- extracellular 4
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 4
- golgi 4
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc06g074170.2.1 | |
| Solyc11g068750.1.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G20510.1 | Solyc06g074170.2.1 | AT5G22290.1 | 21798944 |
| AT3G20510.1 | Solyc11g068750.1.1 | AT5G22290.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400057207 | Potato | endoplasmic reticulum, extracellular | 69.75 | 89.25 |
| Solyc10g006310.2.1 | Tomato | endoplasmic reticulum, extracellular | 81.51 | 81.51 |
| KRH14426 | Soybean | endoplasmic reticulum, extracellular | 76.47 | 76.47 |
| VIT_19s0090g00200.t01 | Wine grape | extracellular, golgi, vacuole | 66.39 | 72.48 |
| Os03t0568500-01 | Rice | endoplasmic reticulum, extracellular | 68.91 | 68.91 |
| GSMUA_Achr6P29380_001 | Banana | endoplasmic reticulum, extracellular | 68.07 | 68.07 |
| TraesCS7A01G190000.1 | Wheat | endoplasmic reticulum, extracellular, plasma membrane | 68.07 | 68.07 |
| TraesCS7D01G191200.1 | Wheat | endoplasmic reticulum, extracellular, plasma membrane | 68.07 | 68.07 |
| Zm00001d013817_P001 | Maize | endoplasmic reticulum, extracellular, vacuole | 68.07 | 67.5 |
| GSMUA_Achr6P21760_001 | Banana | endoplasmic reticulum, extracellular | 67.23 | 67.23 |
| TraesCS7B01G095100.1 | Wheat | endoplasmic reticulum, extracellular, plasma membrane | 66.39 | 66.39 |
| AT3G20510.1 | Thale cress | endoplasmic reticulum, extracellular, vacuole | 66.39 | 66.39 |
| AT1G50740.1 | Thale cress | endoplasmic reticulum, extracellular, vacuole | 64.71 | 64.71 |
| CDY19635 | Canola | extracellular, plasma membrane, vacuole | 64.71 | 64.71 |
| CDY71352 | Canola | endoplasmic reticulum, extracellular, vacuole | 63.03 | 63.03 |
| CDY65222 | Canola | endoplasmic reticulum, extracellular, vacuole | 63.03 | 63.03 |
| CDY25185 | Canola | extracellular, plasma membrane | 64.71 | 62.6 |
| Bra018873.1-P | Field mustard | extracellular, plasma membrane | 63.87 | 61.79 |
| CDY69173 | Canola | plasma membrane | 63.03 | 60.98 |
| KXG36347 | Sorghum | cytosol, plasma membrane, vacuole | 54.62 | 41.4 |
| Zm00001d033054_P001 | Maize | mitochondrion | 66.39 | 40.72 |
| HORVU2Hr1G046220.7 | Barley | extracellular, golgi | 47.9 | 40.14 |
| KXG38150 | Sorghum | extracellular, plasma membrane | 40.34 | 37.21 |
| Solyc04g016440.2.1 | Tomato | endoplasmic reticulum, peroxisome, plasma membrane, plastid | 35.29 | 29.17 |
| CDX82243 | Canola | plasma membrane | 64.71 | 28.0 |
| Solyc10g079260.1.1 | Tomato | plastid | 36.97 | 19.13 |
Protein Annotations
| EnsemblPlants:Solyc07g064470.2.1 | EnsemblPlantsGene:Solyc07g064470.2 | Gene3D:1.20.58.1140 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:TMEM14 | PANTHER:PTHR12668 | PANTHER:PTHR12668:SF14 | PFAM:PF03647 | TMHMM:TMhelix | UniParc:UPI000276C613 |
| UniProt:K4CHC7 | MapMan:5.8.3 | MapMan:24.2.22 | : | : | : |
Description
No Description!
Coordinates
chr7:-:66610109..66612415
Molecular Weight (calculated)
12729.8 Da
IEP (calculated)
9.852
GRAVY (calculated)
0.489
Length
119 amino acids
Sequence
(BLAST)
(BLAST)
001: MHDFCFTIPY GLILVTGGVM GYASKGSTAS LAGGVGTGFA LILAGYLSLQ AFHKRKNSYF ALILETACAA MLTWVMGQRY MQTSKLMPAG AVAGISALMT
101: GFYLYKIATR GNHFPLKTE
101: GFYLYKIATR GNHFPLKTE
001: MHDFCFTIPY GILLIVGGFI GYLKKGSIAS LAGGAGTGLL VVLAGFISLK AFEKKKTSLL ATLLETVIAA ALTFVMGQRF LQTQKIMPAA LVAGISALMT
101: CFYVYKIATG GNHIPPKAE
101: CFYVYKIATG GNHIPPKAE
Arabidopsis Description
FAX5Protein FATTY ACID EXPORT 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9C6T7]
SUBAcon: [endoplasmic reticulum,extracellular,vacuole]
SUBAcon: [endoplasmic reticulum,extracellular,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.